Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0048
         (805 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78412-1|CAB01655.1|  490|Caenorhabditis elegans Hypothetical pr...    36   0.045
Z37983-2|CAA86055.1|  585|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AJ249344-1|CAB77052.1|  449|Caenorhabditis elegans putative inte...    29   5.1  
AF099913-1|AAC68756.1|  466|Caenorhabditis elegans Paralysed arr...    29   5.1  
AL110477-15|CAB54331.2|  295|Caenorhabditis elegans Hypothetical...    28   9.0  

>Z78412-1|CAB01655.1|  490|Caenorhabditis elegans Hypothetical
           protein M176.2 protein.
          Length = 490

 Score = 35.5 bits (78), Expect = 0.045
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 8   RQVGHMLRTKLADANEGGVAAGLGALDSPYLLD 106
           +  GH+LRTK      GGVAAG   +D+P+L +
Sbjct: 456 KTAGHLLRTKPESTAMGGVAAGHAVVDTPFLYE 488


>Z37983-2|CAA86055.1|  585|Caenorhabditis elegans Hypothetical
           protein B0393.2 protein.
          Length = 585

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -3

Query: 623 CICNKNRIPPVVCEELYIDCILKLSQH*GN-KPNVANLIQTNTYFLHRTVAPSSLII*KQ 447
           C+    R PP+      ID  +KL++H  N K N   +I++N  F H TVA SS      
Sbjct: 351 CLQYLMRYPPIAD----IDSFVKLARHYRNPKKNAKPMIKSNN-FSHITVAGSS------ 399

Query: 446 HCLRRKLPKRP 414
           H  R + P+RP
Sbjct: 400 HPNRTQRPQRP 410


>AJ249344-1|CAB77052.1|  449|Caenorhabditis elegans putative
           integrin-linked kinase protein.
          Length = 449

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 620 ICNKNRIPPV-VCEELYIDCILKLSQH*GNKPN 525
           +CNK  + P+ VC+ +  + IL+++Q  G  PN
Sbjct: 128 VCNKKGMTPLDVCQPMCKNTILEIAQEHGQSPN 160


>AF099913-1|AAC68756.1|  466|Caenorhabditis elegans Paralysed arrest
           at two-fold protein4 protein.
          Length = 466

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 620 ICNKNRIPPV-VCEELYIDCILKLSQH*GNKPN 525
           +CNK  + P+ VC+ +  + IL+++Q  G  PN
Sbjct: 145 VCNKKGMTPLDVCQPMCKNTILEIAQEHGQSPN 177


>AL110477-15|CAB54331.2|  295|Caenorhabditis elegans Hypothetical
           protein Y113G7B.9 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 374 DLYILVYKSTVRYEVFLGVSDVGNVAFKLLN*RAPLF 484
           D+Y+  Y+ T+  ++F G      +A+ LLN  AP F
Sbjct: 40  DMYLFYYRFTL--DIFFGAGLFSYIAYTLLNMEAPEF 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,953,016
Number of Sequences: 27780
Number of extensions: 346792
Number of successful extensions: 647
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)