Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0047
         (809 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7527| Best HMM Match : DSL (HMM E-Value=2.5e-34)                    29   4.5  
SB_41624| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_36164| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  

>SB_7527| Best HMM Match : DSL (HMM E-Value=2.5e-34)
          Length = 542

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 647 KCDDNNNEKCIKVWRVAIIQRKIID 573
           KCD N N  C+K W V ++   + +
Sbjct: 517 KCDGNGNRVCLKNWLVCLLSSNVTE 541


>SB_41624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 528 IYKFQTTHSDRWSTEQISPARWKIFPLSLSLPQR 427
           +Y+ +   ++RWS    + AR KI  LS+SLP +
Sbjct: 371 LYRIECRVTNRWSGYWYAQARLKIVDLSVSLPAK 404


>SB_36164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 490 YRANITRSVEDLPFVVKPSPKIFPFRRIFP 401
           YRAN++ S+E +P       KI+P +RI+P
Sbjct: 118 YRANLSLSIEFIPI-----EKIYPIKRIYP 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,157,339
Number of Sequences: 59808
Number of extensions: 364241
Number of successful extensions: 613
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)