Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0047
         (809 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32950.1 68414.m04058 subtilase family protein contains simil...    29   2.8  
At5g49780.1 68418.m06165 leucine-rich repeat transmembrane prote...    28   6.4  
At3g27390.1 68416.m03424 expressed protein                             28   6.4  

>At1g32950.1 68414.m04058 subtilase family protein contains
           similarity to SBT1 GI:1771160 from [Lycopersicon
           esculentum]
          Length = 773

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 789 DRXNNGNGFINL*KGSQISLNLA*SYQDYVLYTCS 685
           D  + G G +N  K ++  L L    QDYVLY CS
Sbjct: 605 DPFDYGGGLVNPEKAAEPGLILDMDSQDYVLYLCS 639


>At5g49780.1 68418.m06165 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1006

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 553 TIFSR*SAYIQVPNNTFGPLVYRAN 479
           ++ SR S     P NTFGP +++AN
Sbjct: 573 SVISRFSTQTYKPPNTFGPYIFKAN 597


>At3g27390.1 68416.m03424 expressed protein 
          Length = 588

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +3

Query: 429 FGEGLTTKGRSSTERVIFAR*TNGPNVL-FGTCIYALYLENIVSEIQASVNYLALYDG 599
           +GE L TKG  +++ +  AR + G  V+  G   Y L  E I+  ++A+ + L L DG
Sbjct: 366 YGEVLATKGLINSKDIEEARSSKGSQVISVGLPAYGLLYE-ILRSVKANSSGLLLSDG 422


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,347,538
Number of Sequences: 28952
Number of extensions: 264274
Number of successful extensions: 521
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)