Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0046
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    29   1.0  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   3.1  

>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
 Frame = +2

Query: 425 CVPTYRRL---TTFRSQTE-----VISDCGLFK*LESITIYN*IRLFVQLLRQERLASDL 580
           CVP+   L   TT RS+ +     +IS CG    L ++T    +R+F + L + +LA  L
Sbjct: 328 CVPSLLHLQENTTLRSKVQDILLRIISVCGTKSLLRNLTNAKHLRIFCERLTKSQLAMFL 387

Query: 581 DNV 589
            N+
Sbjct: 388 PNL 390


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 145 NSIQILVNFYAIENVKTIALSTL 213
           N  + L+NFY IEN KTI  +TL
Sbjct: 874 NRERTLLNFYLIENSKTIDEATL 896


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,333
Number of Sequences: 5004
Number of extensions: 53089
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)