Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0045
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    32   0.11 
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    29   0.79 
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    29   1.0  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    28   1.4  
SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual       27   3.2  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    27   3.2  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    27   3.2  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    27   3.2  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   4.2  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   5.5  
SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr...    26   7.3  
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...    26   7.3  
SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomy...    25   9.7  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    25   9.7  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   9.7  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
 Frame = +1

Query: 229  ADLAR-IRVGTEKMPLGKLSKKQIKAGYKVLSELQNLIKSGDASRNKIVDATNRFFTLI- 402
            +D AR ++  +EK  L    +K  ++  K+ ++L +L KS + S    ++ ++R  TL+ 
Sbjct: 802  SDAARKVKFESEKESLSLSLQKLKESNEKMSNDLHSLQKSLEKSG---IEYSSRIKTLML 858

Query: 403  -PHDFGVNNAPLLDNNEIIKTKTDMMDNLLEIE 498
                   +N  LLDN ++++ K   ++ ++E+E
Sbjct: 859  EKQSLSEDNRKLLDNQQMMEIKLQELNGVIELE 891


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 504 VCLLQSDTDDTVSPIEG 554
           +CL  SD DDT SP+EG
Sbjct: 257 MCLYGSDIDDTTSPVEG 273


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 217 PLHEADLARIRVGTEKMPLGKLSKKQIKAGYKVLSELQNLIKSGDASRNKIVDAT 381
           PL    ++ IR+GT       L +K  K  + +    +NL++ G+ +R  + D T
Sbjct: 67  PLDLTRVSSIRMGTTVATNALLERKGEKTAFIITEGFRNLVEIGNQARPDLFDLT 121


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +1

Query: 304 GYKVLSELQNLIKSGDASRNKIVDATNRFFTLIPHDFGVNNAPLLDNNEIIKTKTDMMDN 483
           G   L  L+ L K  D++    +D     F+ +  DF +NN   L +   +  K+ +   
Sbjct: 5   GKNFLETLKELEKHVDSAHYVSIDCE---FSGLLRDFNLNNKNTLQDRYELLRKSSIRYT 61

Query: 484 LLEIEIAYVY 513
           +L+I I ++Y
Sbjct: 62  ILQIGITFIY 71


>SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 280 TFREAFSLCQLEFEQGLLHVVDVKD 206
           TFREA  +C+   E G L  VDV +
Sbjct: 268 TFREAMYICEAVAESGTLVAVDVME 292


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 298 KAGYKVLSELQNLIKSGDASRNKIVDAT--NRFFTLIPHDFGVNNAPLLDNNEIIK 459
           K   K L E +   K   AS  K++     N F T  P+  G++ APL  +NE ++
Sbjct: 257 KEHLKSLEEFEEKQKVDLASALKMLTTKYDNLFNTSFPYSMGLHQAPLYGSNEEVE 312


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/64 (21%), Positives = 29/64 (45%)
 Frame = +3

Query: 549 EGHYKKLKAEIAPLDKTTDEFEMILEYVRNTHGKTHNFYTLNVEEVFKVIREGEDKRYQA 728
           E  YK +   ++ L++    F+ I+E +   +GK HN   +N  ++   +          
Sbjct: 455 ESIYKNINKRLSTLEERKKAFDEIVEKILTNYGK-HNAKNMNFTQLLHELNSTLQLEISK 513

Query: 729 LSRN 740
           LS++
Sbjct: 514 LSKS 517


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
 Frame = +3

Query: 510 LLQSDTDDTVSPIEGHYKKLKAEIAPLDKTTDEFEMILEYVRNTHGK-THNFYTLNVE-- 680
           L Q + D  +  IE  YKKL+ +   L       E  +EY+   + K      +LN E  
Sbjct: 78  LQQENKDQELKNIEESYKKLEEKTEHLSDDNVSLEKRVEYLETENTKLVKTLNSLNSEFL 137

Query: 681 EVFKVIREGEDKRYQALSRNSTTGRLLWHGF-PQPXXFAGF 800
           ++ + I     +  Q  + NS+    + H   P P     F
Sbjct: 138 QLLRKIAINVKEGRQLTTENSSDTSSMTHPVQPSPSVLGSF 178


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/41 (24%), Positives = 25/41 (60%)
 Frame = +2

Query: 155 VDPKCELAEPVQRLIVTIFDIHYMKQTLLEFELAQRKCLSE 277
           ++ +C++ +  + L+  +FD ++ K+T    E+ ++KC  E
Sbjct: 47  LEVECKIRDGAETLL-QVFDTNFKKETKERKEMLKKKCTDE 86


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -2

Query: 214  VKDGDDESLHGLGELTLGVDSECFRLIVTVVYFQREV-SPRNLDKVIPVFPTVLSFFFVQ 38
            + D  DE+ H   +L   +  EC  ++  ++ F   V SP++  K+IP F  ++  F +Q
Sbjct: 852  IYDVTDENSHL--KLISSLQDECSDVLYLLMEFLNMVCSPKSYYKLIPSFEQLIQDFHIQ 909


>SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 323

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 280 TFREAFSLCQLEFEQGLLHVVDVKD 206
           TFREA  +C+   E G L  VDV +
Sbjct: 268 TFREAMYICESVAETGSLVAVDVME 292


>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 678 EEVFKVIREGEDKRYQALSRNSTTGRLLWHGFP-QPXXFAGFI 803
           EE+FKVIR G+ K+  +  R  T    +  GF  +P  +  FI
Sbjct: 130 EEMFKVIRTGKSKK-NSWKRMITKATFVGDGFTRRPVKYERFI 171


>SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = +3

Query: 510 LLQSDTDDTVSP----IEGHYKKLKAEIAPLDKTTDEFEMILEYVRNTHGKTHNFYTLNV 677
           L + D+D+T +     I    K  +A IA LDK  + +EM++E +       H+  T  V
Sbjct: 136 LKKEDSDETKNKVLYAITSELKLNEAGIALLDKIPNSWEMLIEILE----LKHSVMTKRV 191

Query: 678 EEVFKVIREGEDKRYQAL 731
              F  +   EDK  Q +
Sbjct: 192 IFFFYALLIQEDKSKQII 209


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 74  RNNFVKIPGRYFPLEIDY 127
           RN  VK PG+  PL+ID+
Sbjct: 11  RNELVKEPGKVPPLDIDF 28


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 648 KTHNFYTLNVEEVFKVI 698
           K HN Y+L++E VF V+
Sbjct: 432 KPHNVYSLSIENVFDVL 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,272,608
Number of Sequences: 5004
Number of extensions: 68154
Number of successful extensions: 221
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)