BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0045 (812 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 32 0.11 SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 29 0.79 SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 29 1.0 SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 28 1.4 SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.2 SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz... 27 3.2 SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 27 3.2 SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 27 3.2 SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 27 4.2 SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 5.5 SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr... 26 7.3 SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 26 7.3 SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomy... 25 9.7 SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 25 9.7 SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 25 9.7 >SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1727 Score = 31.9 bits (69), Expect = 0.11 Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 3/93 (3%) Frame = +1 Query: 229 ADLAR-IRVGTEKMPLGKLSKKQIKAGYKVLSELQNLIKSGDASRNKIVDATNRFFTLI- 402 +D AR ++ +EK L +K ++ K+ ++L +L KS + S ++ ++R TL+ Sbjct: 802 SDAARKVKFESEKESLSLSLQKLKESNEKMSNDLHSLQKSLEKSG---IEYSSRIKTLML 858 Query: 403 -PHDFGVNNAPLLDNNEIIKTKTDMMDNLLEIE 498 +N LLDN ++++ K ++ ++E+E Sbjct: 859 EKQSLSEDNRKLLDNQQMMEIKLQELNGVIELE 891 >SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosaccharomyces pombe|chr 1|||Manual Length = 387 Score = 29.1 bits (62), Expect = 0.79 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = +3 Query: 504 VCLLQSDTDDTVSPIEG 554 +CL SD DDT SP+EG Sbjct: 257 MCLYGSDIDDTTSPVEG 273 >SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1260 Score = 28.7 bits (61), Expect = 1.0 Identities = 15/55 (27%), Positives = 27/55 (49%) Frame = +1 Query: 217 PLHEADLARIRVGTEKMPLGKLSKKQIKAGYKVLSELQNLIKSGDASRNKIVDAT 381 PL ++ IR+GT L +K K + + +NL++ G+ +R + D T Sbjct: 67 PLDLTRVSSIRMGTTVATNALLERKGEKTAFIITEGFRNLVEIGNQARPDLFDLT 121 >SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual Length = 427 Score = 28.3 bits (60), Expect = 1.4 Identities = 18/70 (25%), Positives = 33/70 (47%) Frame = +1 Query: 304 GYKVLSELQNLIKSGDASRNKIVDATNRFFTLIPHDFGVNNAPLLDNNEIIKTKTDMMDN 483 G L L+ L K D++ +D F+ + DF +NN L + + K+ + Sbjct: 5 GKNFLETLKELEKHVDSAHYVSIDCE---FSGLLRDFNLNNKNTLQDRYELLRKSSIRYT 61 Query: 484 LLEIEIAYVY 513 +L+I I ++Y Sbjct: 62 ILQIGITFIY 71 >SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual Length = 323 Score = 27.1 bits (57), Expect = 3.2 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -2 Query: 280 TFREAFSLCQLEFEQGLLHVVDVKD 206 TFREA +C+ E G L VDV + Sbjct: 268 TFREAMYICEAVAESGTLVAVDVME 292 >SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 369 Score = 27.1 bits (57), Expect = 3.2 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Frame = +1 Query: 298 KAGYKVLSELQNLIKSGDASRNKIVDAT--NRFFTLIPHDFGVNNAPLLDNNEIIK 459 K K L E + K AS K++ N F T P+ G++ APL +NE ++ Sbjct: 257 KEHLKSLEEFEEKQKVDLASALKMLTTKYDNLFNTSFPYSMGLHQAPLYGSNEEVE 312 >SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe|chr 2|||Manual Length = 659 Score = 27.1 bits (57), Expect = 3.2 Identities = 14/64 (21%), Positives = 29/64 (45%) Frame = +3 Query: 549 EGHYKKLKAEIAPLDKTTDEFEMILEYVRNTHGKTHNFYTLNVEEVFKVIREGEDKRYQA 728 E YK + ++ L++ F+ I+E + +GK HN +N ++ + Sbjct: 455 ESIYKNINKRLSTLEERKKAFDEIVEKILTNYGK-HNAKNMNFTQLLHELNSTLQLEISK 513 Query: 729 LSRN 740 LS++ Sbjct: 514 LSKS 517 >SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pombe|chr 1|||Manual Length = 264 Score = 27.1 bits (57), Expect = 3.2 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 4/101 (3%) Frame = +3 Query: 510 LLQSDTDDTVSPIEGHYKKLKAEIAPLDKTTDEFEMILEYVRNTHGK-THNFYTLNVE-- 680 L Q + D + IE YKKL+ + L E +EY+ + K +LN E Sbjct: 78 LQQENKDQELKNIEESYKKLEEKTEHLSDDNVSLEKRVEYLETENTKLVKTLNSLNSEFL 137 Query: 681 EVFKVIREGEDKRYQALSRNSTTGRLLWHGF-PQPXXFAGF 800 ++ + I + Q + NS+ + H P P F Sbjct: 138 QLLRKIAINVKEGRQLTTENSSDTSSMTHPVQPSPSVLGSF 178 >SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces pombe|chr 2|||Manual Length = 1309 Score = 26.6 bits (56), Expect = 4.2 Identities = 10/41 (24%), Positives = 25/41 (60%) Frame = +2 Query: 155 VDPKCELAEPVQRLIVTIFDIHYMKQTLLEFELAQRKCLSE 277 ++ +C++ + + L+ +FD ++ K+T E+ ++KC E Sbjct: 47 LEVECKIRDGAETLL-QVFDTNFKKETKERKEMLKKKCTDE 86 >SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1628 Score = 26.2 bits (55), Expect = 5.5 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = -2 Query: 214 VKDGDDESLHGLGELTLGVDSECFRLIVTVVYFQREV-SPRNLDKVIPVFPTVLSFFFVQ 38 + D DE+ H +L + EC ++ ++ F V SP++ K+IP F ++ F +Q Sbjct: 852 IYDVTDENSHL--KLISSLQDECSDVLYLLMEFLNMVCSPKSYYKLIPSFEQLIQDFHIQ 909 >SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 323 Score = 25.8 bits (54), Expect = 7.3 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -2 Query: 280 TFREAFSLCQLEFEQGLLHVVDVKD 206 TFREA +C+ E G L VDV + Sbjct: 268 TFREAMYICESVAETGSLVAVDVME 292 >SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 260 Score = 25.8 bits (54), Expect = 7.3 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 678 EEVFKVIREGEDKRYQALSRNSTTGRLLWHGFP-QPXXFAGFI 803 EE+FKVIR G+ K+ + R T + GF +P + FI Sbjct: 130 EEMFKVIRTGKSKK-NSWKRMITKATFVGDGFTRRPVKYERFI 171 >SPBC3B9.01 |||Hsp70 nucleotide exchange factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 287 Score = 25.4 bits (53), Expect = 9.7 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Frame = +3 Query: 510 LLQSDTDDTVSP----IEGHYKKLKAEIAPLDKTTDEFEMILEYVRNTHGKTHNFYTLNV 677 L + D+D+T + I K +A IA LDK + +EM++E + H+ T V Sbjct: 136 LKKEDSDETKNKVLYAITSELKLNEAGIALLDKIPNSWEMLIEILE----LKHSVMTKRV 191 Query: 678 EEVFKVIREGEDKRYQAL 731 F + EDK Q + Sbjct: 192 IFFFYALLIQEDKSKQII 209 >SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 240 Score = 25.4 bits (53), Expect = 9.7 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = +2 Query: 74 RNNFVKIPGRYFPLEIDY 127 RN VK PG+ PL+ID+ Sbjct: 11 RNELVKEPGKVPPLDIDF 28 >SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 935 Score = 25.4 bits (53), Expect = 9.7 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = +3 Query: 648 KTHNFYTLNVEEVFKVI 698 K HN Y+L++E VF V+ Sbjct: 432 KPHNVYSLSIENVFDVL 448 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,272,608 Number of Sequences: 5004 Number of extensions: 68154 Number of successful extensions: 221 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 210 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 221 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 396433620 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -