Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0045
(812 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0) 109 3e-24
SB_4467| Best HMM Match : PARP (HMM E-Value=0) 73 4e-13
SB_2975| Best HMM Match : PARP (HMM E-Value=0) 73 4e-13
SB_36208| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_34589| Best HMM Match : WGR (HMM E-Value=0.37) 45 6e-05
SB_30375| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_51107| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.36
SB_12111| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_46911| Best HMM Match : MSSP (HMM E-Value=4.4) 30 1.9
SB_22119| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-17) 30 2.6
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17) 30 2.6
SB_21746| Best HMM Match : PHD (HMM E-Value=0.066) 29 4.5
SB_9777| Best HMM Match : PHD (HMM E-Value=0.066) 29 4.5
SB_6377| Best HMM Match : Exo_endo_phos (HMM E-Value=6.5e-10) 29 4.5
SB_2883| Best HMM Match : Exo_endo_phos (HMM E-Value=2.1e-09) 29 4.5
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 7.8
>SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0)
Length = 834
Score = 109 bits (261), Expect = 3e-24
Identities = 47/91 (51%), Positives = 67/91 (73%)
Frame = +1
Query: 235 LARIRVGTEKMPLGKLSKKQIKAGYKVLSELQNLIKSGDASRNKIVDATNRFFTLIPHDF 414
L + +KMPLGKL+K+QI+ Y VL E Q ++ AS+ ++D +NRF+TLIPHDF
Sbjct: 521 LIEFEIDLKKMPLGKLTKRQIEKAYSVLGEAQQILSEA-ASKTAVLDGSNRFYTLIPHDF 579
Query: 415 GVNNAPLLDNNEIIKTKTDMMDNLLEIEIAY 507
G+ PLLDN E+IKTK +M+DNL++IE+A+
Sbjct: 580 GMRKPPLLDNQELIKTKIEMLDNLIDIEVAF 610
Score = 82.6 bits (195), Expect = 3e-16
Identities = 43/100 (43%), Positives = 60/100 (60%)
Frame = +3
Query: 510 LLQSDTDDTVSPIEGHYKKLKAEIAPLDKTTDEFEMILEYVRNTHGKTHNFYTLNVEEVF 689
L SD +D PI+ +YKKLK +I LD + EF +I EYV NTH TH Y L + +VF
Sbjct: 613 LQSSDGEDAEDPIDINYKKLKTDIEVLDHKSAEFGLISEYVSNTHADTHRQYELELLDVF 672
Query: 690 KVIREGEDKRYQALSRNSTTGRLLWHGFPQPXXFAGFISQ 809
K+ REGE+ ++ + +LLWHG + +AG +SQ
Sbjct: 673 KIKREGEEALFKPF-KQLHNRQLLWHG-SRTTNYAGILSQ 710
Score = 36.3 bits (80), Expect = 0.030
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +2
Query: 164 KCELAEPVQRLIVTIFDIHYMKQTLLEFELAQRK 265
K +L +Q LI IFD+ MK+TL+EFE+ +K
Sbjct: 497 KSKLPSQIQELIKMIFDVESMKKTLIEFEIDLKK 530
>SB_4467| Best HMM Match : PARP (HMM E-Value=0)
Length = 293
Score = 72.5 bits (170), Expect = 4e-13
Identities = 37/102 (36%), Positives = 56/102 (54%)
Frame = +3
Query: 504 VCLLQSDTDDTVSPIEGHYKKLKAEIAPLDKTTDEFEMILEYVRNTHGKTHNFYTLNVEE 683
+ +L+ DD + P + HY+ L ++ PLD D+F+M+ YV NTH +THN Y + VE+
Sbjct: 9 ITMLKEKVDDKMHPADKHYESLHCDLEPLDHAHDDFKMVKMYVENTHAQTHNQYKMEVED 68
Query: 684 VFKVIREGEDKRYQALSRNSTTGRLLWHGFPQPXXFAGFISQ 809
VF V + ED + LLWHG + +AG + Q
Sbjct: 69 VFVVRHQKED------FLDVGNRMLLWHG-SRLTNWAGILKQ 103
>SB_2975| Best HMM Match : PARP (HMM E-Value=0)
Length = 174
Score = 72.5 bits (170), Expect = 4e-13
Identities = 37/102 (36%), Positives = 56/102 (54%)
Frame = +3
Query: 504 VCLLQSDTDDTVSPIEGHYKKLKAEIAPLDKTTDEFEMILEYVRNTHGKTHNFYTLNVEE 683
+ +L+ DD + P + HY+ L ++ PLD D+F+M+ YV NTH +THN Y + VE+
Sbjct: 9 ITMLKEKVDDKMHPADKHYESLHCDLEPLDHAHDDFKMVKMYVENTHAQTHNQYKMEVED 68
Query: 684 VFKVIREGEDKRYQALSRNSTTGRLLWHGFPQPXXFAGFISQ 809
VF V + ED + LLWHG + +AG + Q
Sbjct: 69 VFVVRHQKED------FLDVGNRMLLWHG-SRLTNWAGILKQ 103
>SB_36208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 47
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +1
Query: 277 KLSKKQIKAGYKVLSELQNLIKSGDASRNKIVDATNRFFTLIPHDF 414
KL+ QIKAGY+ L ++++ I GD NK+V A + F+T IPH F
Sbjct: 2 KLTTDQIKAGYEALKKIESCISKGDYG-NKLVKACDEFYTRIPHCF 46
>SB_34589| Best HMM Match : WGR (HMM E-Value=0.37)
Length = 113
Score = 45.2 bits (102), Expect = 6e-05
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Frame = +2
Query: 5 DLDNALDRFQALYEEKTENRWKDRNNFVKIPGRYFPLEIDYGDNETKTLTVDPKCEL-AE 181
+LD A F+ + +KT+N W+DR +F K+ G+Y L +DY E + K E A+
Sbjct: 15 NLDAAKRTFEKKFSDKTKNDWEDRASFTKVQGKYDLLIMDYKAEENDEVDAPVKEEKPAK 74
Query: 182 P-------VQRLIVTIFDIHYMKQTLLEFELAQRK 265
P V+ L+ I ++ M++ L E + +K
Sbjct: 75 PESKLDCRVRELVELICNVQAMEEALKEMKYDTKK 109
>SB_30375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 34.3 bits (75), Expect = 0.12
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 5 DLDNALDRFQALYEEKTENRWKDRNNFVKIPGRY 106
D A D F+ ++ KT N W ++ +FVK P +Y
Sbjct: 143 DAKAATDEFKKIFRSKTGNLWDEKGSFVKHPKKY 176
>SB_51107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 32.7 bits (71), Expect = 0.36
Identities = 11/31 (35%), Positives = 23/31 (74%)
Frame = +2
Query: 2 KDLDNALDRFQALYEEKTENRWKDRNNFVKI 94
KD+D LD+F +L++ + + W++++N+V I
Sbjct: 319 KDIDKLLDKFMSLHKPEDISAWEEKHNYVWI 349
>SB_12111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 447
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/44 (43%), Positives = 21/44 (47%)
Frame = -3
Query: 627 TPGSFRTRRWFCRAALSPPSASCSGLRWGSPCRQCLIVIDIRNF 496
T S RR FCR A PPS S L GS R L V+ + F
Sbjct: 185 TLASADVRRCFCRYAPPPPSRSAHLLTCGSVSRWVLAVLGMGAF 228
>SB_46911| Best HMM Match : MSSP (HMM E-Value=4.4)
Length = 424
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 528 DDTVSPIEGHYKKLKAEIAPLDKTTDEFEMILEY--VRNTHGKTHNFYTLNVEEVFKVIR 701
D V P G YK +AP D + I +Y V NT + N NV + V +
Sbjct: 235 DQHVIPGMGDYK-----VAPSDNRGPTLDPIPQYEPVNNTQARPSN--RSNVTQYNDVTQ 287
Query: 702 EGEDKRYQALSRNSTTGR 755
EG +Y+A++R+++ R
Sbjct: 288 EGNVTQYEAMNRHASRDR 305
>SB_22119| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-17)
Length = 345
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = -2
Query: 331 SAVQIILCSLLLFVS*TT-FREAFSLCQLEF 242
SAV+++LCSL+LFV T F +L +LEF
Sbjct: 245 SAVRMVLCSLVLFVVCTAPFYAILTLARLEF 275
>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
Length = 1189
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +2
Query: 26 RFQALYEEKTENRWKDRNNFVKIPGRYFPLEIDYGDNETKTLTVDPKCELAEPVQRLIVT 205
+ Q L EE + K +F+K PG+ P +D N+T ++ V E + L+ T
Sbjct: 345 QLQHLKEENSPQMRKPTTHFLK-PGKLIPAGLDSTPNKTNSVAVCWSKETQLSIYSLVKT 403
Query: 206 IFDIHY 223
DI +
Sbjct: 404 AKDIEH 409
>SB_21746| Best HMM Match : PHD (HMM E-Value=0.066)
Length = 203
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 278 FPRGIFSVPTRIRARSASCSGCQRW 204
FP GI S P RI R C C W
Sbjct: 98 FPCGICSKPVRINQRGIQCDFCDIW 122
>SB_9777| Best HMM Match : PHD (HMM E-Value=0.066)
Length = 203
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 278 FPRGIFSVPTRIRARSASCSGCQRW 204
FP GI S P RI R C C W
Sbjct: 98 FPCGICSKPVRINQRGIQCDFCDIW 122
>SB_6377| Best HMM Match : Exo_endo_phos (HMM E-Value=6.5e-10)
Length = 450
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 278 FPRGIFSVPTRIRARSASCSGCQRW 204
FP GI S P RI R C C W
Sbjct: 98 FPCGICSKPVRINQRGIQCDFCDIW 122
>SB_2883| Best HMM Match : Exo_endo_phos (HMM E-Value=2.1e-09)
Length = 598
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 278 FPRGIFSVPTRIRARSASCSGCQRW 204
FP GI S P RI R C C W
Sbjct: 95 FPCGICSKPVRINQRGIQCDFCDIW 119
>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1752
Score = 28.3 bits (60), Expect = 7.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 556 WPSMGLTVSSVSDCNRHTQ 500
WP G+ S+++DC RH Q
Sbjct: 1198 WPDCGIKSSTLTDCQRHYQ 1216
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,665,084
Number of Sequences: 59808
Number of extensions: 520264
Number of successful extensions: 1516
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1511
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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