Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0045
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.4  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   5.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.9  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   7.8  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 651 THNFYTLNVEEVFKVIREGEDKRYQ 725
           + N Y +N E + K   +G D +Y+
Sbjct: 271 SENLYYVNTESLMKSENQGNDVQYE 295


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +1

Query: 325 LQNLIKSGDASRNKIVDATNRFFTLIPHDFGVNNAPLLDNNEIIKTKTDMMDNLL 489
           +++L K  +A   K  + TNR   +  HD    +  L+   ++++   D++ + L
Sbjct: 96  IEHLTKLNNAIEEKRFELTNRKGVVFHHDDARPHTYLVTRQKLLELGWDVLPHSL 150


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 160 VDSECFRLIVTVVYFQREVSPRNLDKVIPVF 68
           +D +CF+ I+      R+    +  K +P+F
Sbjct: 191 IDRQCFQTIMMRTGLSRQAEYTDFLKSVPIF 221


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/51 (21%), Positives = 24/51 (47%)
 Frame = +1

Query: 325 LQNLIKSGDASRNKIVDATNRFFTLIPHDFGVNNAPLLDNNEIIKTKTDMM 477
           ++ L K  +A   K  + TNR   +  HD    +  L+   ++++   D++
Sbjct: 95  IEQLTKLNNAVEEKRPELTNRKSVVFHHDNARPHTSLVTRQKLLELGWDVL 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,575
Number of Sequences: 438
Number of extensions: 4780
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)