Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0044
         (802 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   3.7  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   3.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   3.7  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   8.7  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   8.7  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +2

Query: 203 GAGNRRQAVRSEHRHLQDLGRKYGLAGANDEEAFEIDQNVEFLND 337
           G+G++        +HLQ+LG +   A +++++  +  Q     ND
Sbjct: 153 GSGHQDSRTSPSGQHLQELGLRLEDANSDEQDDGDDGQGSSTNND 197


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +2

Query: 203 GAGNRRQAVRSEHRHLQDLGRKYGLAGANDEEAFEIDQNVEFLND 337
           G+G++        +HLQ+LG +   A +++++  +  Q     ND
Sbjct: 153 GSGHQDSRTSPSGQHLQELGLRLEDANSDEQDDGDDGQGSSTNND 197


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +2

Query: 203 GAGNRRQAVRSEHRHLQDLGRKYGLAGANDEEAFEIDQNVEFLND 337
           G+G++        +HLQ+LG +   A +++++  +  Q     ND
Sbjct: 153 GSGHQDSRTSPSGQHLQELGLRLEDANSDEQDDGDDGQGSSTNND 197


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 475 YRAWQVDLGR 504
           YR WQ+ LGR
Sbjct: 344 YRHWQIPLGR 353


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 165 PEFKPKTPFGQMPVLEIDGK 224
           P  KP+TPF    +L ++ K
Sbjct: 114 PNRKPRTPFTTQQLLALEKK 133


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,168
Number of Sequences: 336
Number of extensions: 2582
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)