Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0044
(802 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0629 - 5183504-5184970 33 0.26
06_01_1196 + 10289708-10289823,10290828-10291541,10291614-102920... 31 1.1
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 29 3.3
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 29 3.3
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530... 29 4.3
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 29 5.7
01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911 29 5.7
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 28 7.5
01_03_0229 + 13995610-13995844,13996391-13996445,13998126-139982... 28 9.9
>12_01_0629 - 5183504-5184970
Length = 488
Score = 33.1 bits (72), Expect = 0.26
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 487 QVDLGRLLYAGMYDYLKAMLQKPDLEQKYPAFRKPIEAVLAIPKVKAY 630
+VD+G++LY GM+D L +L D + I A+LA P +
Sbjct: 166 EVDIGQVLYHGMFDLLANVLLSVDAHPNLRDLMEDIVAILAKPNASDF 213
>06_01_1196 +
10289708-10289823,10290828-10291541,10291614-10292058,
10292329-10293642
Length = 862
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = -1
Query: 367 VVDRCGTGANVVQELHVLVDLEGLLVIGPGEPVLATEVLQMAVL*AYCLPSISSTGI*PN 188
VVD T + V++EL L L L V+ G L E+L A+ Y L S+ +
Sbjct: 616 VVDIRRTSSRVIKELGQLSKLRKLYVVTKGSTKLKCEILYTAIQKLYSLQSLHMDAVGCT 675
Query: 187 GV 182
G+
Sbjct: 676 GI 677
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 153 SENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRTSVASTGSP 281
S PE+ P G++P+LE +S AI R ++S+ P
Sbjct: 600 SNKTPEYLKMNPIGKVPILETPDGPVFESNAIARYVLSSSHFP 642
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 153 SENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICR 254
S PEF P G++PVLE +S AI R
Sbjct: 39 SNKTPEFLKMNPIGKIPVLETPDGPVFESNAIAR 72
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 138 DNRISSENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICR 254
D R ++ P F PFGQ+PVL+ + +S AI R
Sbjct: 39 DLRTAAHKQPHFLALNPFGQIPVLQDGDEVLYESRAINR 77
>01_04_0021 -
15151645-15151809,15152184-15152343,15152548-15153025,
15153243-15153291,15153585-15153734
Length = 333
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 165 PEFKPKTPFGQMPVLEIDGKQYAQSTAICR 254
PE + PFG++PVLE QS AI R
Sbjct: 44 PEHLARNPFGEIPVLEDGDLTLYQSRAIAR 73
>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 439 ETQ*DTDEEQRSYRAWQVDLGRLLYAGMYDYLKAMLQKPDLEQK 570
E + D D+E SY +W VD Y +++A+ QK E++
Sbjct: 1572 EAEIDEDQEPLSYESWDVDFATTAYR---QHVEALAQKQLFEEQ 1612
>01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911
Length = 214
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +3
Query: 57 VKFYYFPVKALGESQRLLLAYGGQEFE----DNRISSENWPEFKPKTPFGQMPVLEIDG 221
+K Y P+ + L G+++E D I+ PE + PFGQ+P L+ DG
Sbjct: 3 MKVYGLPMSTNVARVLVCLEEAGEQYEVVPIDFSIAEHKSPEHTSRNPFGQVPALQ-DG 60
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 153 SENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICR 254
S PEF P G++PVLE +S AI R
Sbjct: 63 SNKTPEFLKMNPLGKIPVLETPEGAVFESNAIAR 96
>01_03_0229 +
13995610-13995844,13996391-13996445,13998126-13998211,
13999484-13999671,14000111-14000169,14000618-14000646,
14000742-14001138,14001569-14002028
Length = 502
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 257 GPADGGALSVLLAVDFQHRHLT 192
GP+DG L+ + +DF H H T
Sbjct: 281 GPSDGRPLATVHPIDFHHNHWT 302
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,663,193
Number of Sequences: 37544
Number of extensions: 312750
Number of successful extensions: 993
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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