Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0042
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...   120   1e-28
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    42   9e-05
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    31   0.096
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    31   0.13 
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    30   0.22 
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    28   0.89 
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    28   1.2  
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    26   3.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   3.6  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   3.6  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    26   4.8  
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    26   4.8  
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    25   6.3  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   8.3  

>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score =  120 bits (290), Expect = 1e-28
 Identities = 60/115 (52%), Positives = 77/115 (66%), Gaps = 2/115 (1%)
 Frame = +2

Query: 254 LGGTCLNVGCIPSKALLHNSHLYHMAKHDFKQRGIETGEVTFDFKKMMEYKANAVKGLTG 433
           LGGTCLNVGCIPSKALL+NSH+YH  KHD K+RGI+   V+ +  +MM+ K ++VK LT 
Sbjct: 80  LGGTCLNVGCIPSKALLNNSHIYHTVKHDTKRRGIDVSGVSVNLSQMMKAKDDSVKSLTS 139

Query: 434 GIAMLFQKNKVNLVKGVGTIVAPNKL--KYTERRVLRLLIPKIF*FASGSEVTPF 592
           GI  LF+KNKV   KG G+ + P  L  K  +    + +  K F  A+GSEV PF
Sbjct: 140 GIEYLFKKNKVEYAKGTGSFIDPQTLSVKGIDGAADQTIKAKNFIIATGSEVKPF 194



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 24/46 (52%), Positives = 32/46 (69%)
 Frame = +3

Query: 117 RIATRQYATTHDADLVVIGSGPGGYVAAIKAAQLGMKVVSVEKDPT 254
           R+ + + +   + DL VIG GPGGYVAAI+ AQLG+K + VEK  T
Sbjct: 34  RLYSAKASGNGEYDLCVIGGGPGGYVAAIRGAQLGLKTICVEKRGT 79


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
 Frame = +2

Query: 254 LGGTCLNVGCIPSKALLHNSHLYHMAKHDFKQRGIETGEV-TFDFKKMMEYKANAVKGLT 430
           LGGTC+N GC+P K + + + L    K   KQ G    ++ +FD+  M++ K +A  G  
Sbjct: 42  LGGTCVNYGCVPKKIMWNIADLVAKMK-TAKQNGFPNSQLGSFDW-GMIKRKRDAYIGRL 99

Query: 431 GGI-AMLFQKNKVNLVKGVGTIVAPNKL 511
            GI      K+ V  + G  + V+P ++
Sbjct: 100 NGIYERNVNKDGVAYISGHASFVSPTEV 127


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 31.5 bits (68), Expect = 0.096
 Identities = 17/48 (35%), Positives = 30/48 (62%)
 Frame = -3

Query: 286 YTSNIETSTS*VGSFSTETTFMPSWAALIAATYPPGPEPITTRSASCV 143
           ++S++ +S+S   S S  T+ + S A+++++TY  GP  IT  S S V
Sbjct: 146 HSSSVPSSSSSYHSSSMTTSGLSSSASIVSSTYRDGPSIITLVSTSYV 193


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 144 THDADLVVIGSGPGGYVAAIKAAQLGMKVVSVEKD 248
           T DAD+++IG+G  G        + G KV+ +E+D
Sbjct: 3   TQDADIIIIGAGITGCALGAALGRQGRKVLVLERD 37


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +3

Query: 144 THDADLVVIGSGPGGYVAAIKAAQLGMKVVSVE 242
           TH+  +V+IGSGP G+ AAI  A+  +K V  E
Sbjct: 2   THNK-VVIIGSGPAGHTAAIYLARGELKPVMYE 33


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 150 DADLVVIGSGPGGYVAAIKAAQLGMK 227
           D D+ ++G+GP G  AAI+  Q   K
Sbjct: 90  DVDVCIVGAGPAGLSAAIRIKQQAAK 115


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 111 LVRIATRQYATTHDA--DLVVIGSGPGGYVAAIKAAQLGMKVVSVEK 245
           + R   R + T+ +   ++VVIG G  G  AA  A++LG K   + K
Sbjct: 1   MFRTTKRYFCTSFNRRKNVVVIGGGHAGVEAAAAASRLGAKTTLLTK 47


>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
 Frame = +3

Query: 99  RSGSLVRIATRQYATTHD----ADLVVIGSGPGGYVAA--IKAAQLGMKVVSVE 242
           R  ++ R  TR+Y +  D    +D+V++G+G  G  AA  I   +  +K+  +E
Sbjct: 55  RESTVSRAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIE 108


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = -3

Query: 505  IWGNYSSYTFDKINLVLLKEHCNTSCEAFNSISFIFHHLFEVKCNFTSFNTPLLEVM 335
            I+GNY  +  + IN  LL  + N   ++    +  +   F ++CN + FN  +L+++
Sbjct: 1938 IYGNYL-HLEEYINKKLLLINPNEEPDSLLFYALAYDLKFLIRCNQSQFNCDILQLL 1993


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 421 RPHRRYCNALSEEQG*SCQRCRNYSCPK*IEV-HGE 525
           +P R++CN        +CQ C    C K  EV H E
Sbjct: 96  KPPRKFCNVCGYWGKYACQNCGTSYCSKGCEVIHSE 131


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 159  LVVIGSGPGGYVAAIKAAQLGMKVVSVEK 245
            + +IGSGP G  AA +  + G  VV  E+
Sbjct: 1758 VAIIGSGPAGLAAADQLNRAGHHVVIYER 1786


>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 102 SGSLVRIATRQYATTHDADLVVIGSGPGGYVAAIKAAQLGMKVVS 236
           S +++   T++Y   H   LVVIG+G G  V A       +K++S
Sbjct: 325 SDNIISFTTKRY---HTRPLVVIGAGAGAAVTAAGVLGDMIKIMS 366


>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 20/80 (25%), Positives = 32/80 (40%)
 Frame = +3

Query: 12  LRILYFNPKIQKKLLNMGYKFLKLASPTFRSGSLVRIATRQYATTHDADLVVIGSGPGGY 191
           +R+   N     ++ N  +KF K          LV       A    +D  V+  GPG  
Sbjct: 4   IRVRNNNAASDAEVRNTVFKFNKDFGQHILKNPLVAQGIVDKADLKQSD-TVLEVGPGTG 62

Query: 192 VAAIKAAQLGMKVVSVEKDP 251
              ++  +   KV++VE DP
Sbjct: 63  NLTVRMLEKARKVIAVEMDP 82


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 454 LKEHCNTSCEAFNSISFIFHHLFEVKCNFTSFNTPLLE 341
           +K+   +   ++ SIS ++H L +   N  S N  LLE
Sbjct: 778 MKQSFTSLVNSYQSISNLYHELRDDHVNMQSQNNTLLE 815


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,634
Number of Sequences: 5004
Number of extensions: 53170
Number of successful extensions: 168
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)