Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0042
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)          58   7e-09
SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)            49   2e-06
SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)               36   0.025
SB_28920| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.24)              33   0.17 
SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)               32   0.30 
SB_13458| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_32511| Best HMM Match : DUF885 (HMM E-Value=8.6e-15)                29   3.7  
SB_58076| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_44282| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               28   6.5  
SB_10143| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)
          Length = 387

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 29/52 (55%), Positives = 36/52 (69%)
 Frame = +3

Query: 111 LVRIATRQYATTHDADLVVIGSGPGGYVAAIKAAQLGMKVVSVEKDPT*EVL 266
           + R     ++   + DLVVIGSGPGGYVAAIKAAQLGMKV   + D + EV+
Sbjct: 21  ITRQKVLHFSLLGEVDLVVIGSGPGGYVAAIKAAQLGMKVTVYKDDLSTEVI 72


>SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)
          Length = 320

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 21/26 (80%), Positives = 22/26 (84%)
 Frame = +2

Query: 254 LGGTCLNVGCIPSKALLHNSHLYHMA 331
           LGGTCLNVGC+PSKALLH S LY  A
Sbjct: 292 LGGTCLNVGCMPSKALLHASELYEAA 317



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 18/29 (62%), Positives = 24/29 (82%)
 Frame = +3

Query: 156 DLVVIGSGPGGYVAAIKAAQLGMKVVSVE 242
           D+++IG GPGGY AAI+A QLG+KV  +E
Sbjct: 259 DVLIIGGGPGGYNAAIRAGQLGLKVACIE 287


>SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)
          Length = 394

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 108 SLVRIATR-QYATTHDADLVVIGSGPGGYVAAIKAAQLGMKVVSVE 242
           S +RI+ R   A     D VVIG G GG  +A +AA+ G+K V +E
Sbjct: 35  SQMRISLRLMMAAVKAYDYVVIGGGSGGIASARRAAEFGVKAVVIE 80



 Score = 35.1 bits (77), Expect = 0.043
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +2

Query: 254 LGGTCLNVGCIPSKALLHNSHLYHMAKH-DFKQRG-IETGEVTFDFKKMM 397
           LGGTC+NVGC+P KA     H+  +A H  F   G ++ G+  F  K ++
Sbjct: 84  LGGTCVNVGCVPKKA-----HVDFVAGHAQFTPDGNVKVGDQLFSGKHIL 128


>SB_28920| Best HMM Match : Pyr_redox_2 (HMM E-Value=0.24)
          Length = 284

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 15/29 (51%), Positives = 23/29 (79%)
 Frame = +3

Query: 159 LVVIGSGPGGYVAAIKAAQLGMKVVSVEK 245
           ++VIGSGP G  +A++AA LG +V+ +EK
Sbjct: 63  VLVIGSGPCGLRSALEAALLGAQVMVIEK 91


>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
          Length = 1631

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +3

Query: 141 TTHDADLVVIGSGPGGYVAAIKAAQLGMKVVSVEK 245
           T     ++VIG+GP G   AI+ A LG +VV VEK
Sbjct: 551 TCEHLQVLVIGAGPIGLRTAIEMALLGAQVVVVEK 585


>SB_13458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 150 DADLVVIGSGPGGYVAAIKAAQL 218
           +AD+V++G GP G  A+IK  QL
Sbjct: 7   EADVVIVGGGPAGLSASIKLKQL 29


>SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 150 DADLVVIGSGPGGYVAAIKAAQLGMKVVSVEK 245
           + D VVIGSG GG   A   A+ G K++ +E+
Sbjct: 85  EVDAVVIGSGIGGMTCASLLAKTGKKILVLEQ 116


>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1240

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -3

Query: 271 ETSTS*VGSFSTETTFMPSWAALIAATYPPGPEPITT 161
           ETST    S + + T  P++A  IA T PP P+P TT
Sbjct: 855 ETSTE--SSTTAQPTQPPTFAPSIAPTQPPTPKPPTT 889


>SB_32511| Best HMM Match : DUF885 (HMM E-Value=8.6e-15)
          Length = 510

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 499 GNYSSYTFDKINLVLLKEHCNTSC-EAFNSISFIFHHLFE 383
           G  ++Y   ++NL+ L+EH      EAFN   F +H L E
Sbjct: 390 GQATAYMVGQLNLMRLREHARQQLGEAFNLKDFHYHLLKE 429


>SB_58076| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 229 TFMPSWAALIAATYPPG-PEPITTRSASCVVAYCL 128
           T +P+W AL  A YP G P   T R AS  +A  L
Sbjct: 19  TLIPTWRALNDAPYPVGDPLESTCRHASLALAVVL 53


>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +3

Query: 15  RILYFNPKIQKKLLNMGYKFLKLASPTFRSGSLVRIATRQYATTHDADLVVIGSGPGGYV 194
           RILY NPK +   L+M    ++   P+F S S+  I      T  D  L ++ +   G  
Sbjct: 217 RILYVNPKNKVVSLSMLDSIIQFKLPSFESCSIGDIFDNVTITRGDQGLGLLANVKDGLN 276

Query: 195 AAIKAAQLGMKVV 233
             +  +Q+  K +
Sbjct: 277 GFVHFSQVSDKQI 289


>SB_44282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 269 LNVGCIPSKALLHNSHLYHMAKHDFKQRGIETGEVTFDFKKMMEY 403
           L   C+P   ++  ++ + +AKHD         E TF F K+M +
Sbjct: 124 LQSACVPDHYIVQKNYRFFLAKHDGSLHFAR--EATFAFYKIMSF 166


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -3

Query: 229 TFMPSWAALIAATYPPGPEPITTRSASCVVAYCLVA 122
           +F PS A     T PP P    T S S VVA  LVA
Sbjct: 160 SFKPSAAGASVPTAPPVPVVSATFSPSVVVASALVA 195


>SB_10143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 200 SCYVSTRARTDNNKICIMCGSILS 129
           S Y STR  TD+N + ++ G+ILS
Sbjct: 43  SIYYSTRKYTDSNGLIVVVGTILS 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,659,342
Number of Sequences: 59808
Number of extensions: 384288
Number of successful extensions: 1028
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)