Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0042
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   3.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   6.9  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   9.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.1  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -1

Query: 564 N*NIFGINSLNTLLSVYFNLFGATIVPTPL 475
           N N +  N+ N    +Y+N+     +P P+
Sbjct: 337 NYNNYNNNNYNNYKKLYYNIINIEQIPVPV 366


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -2

Query: 185  TRARTDNNKICIMCGSILSCSNSY*TSTSKGRRGKF 78
            T+ +  ++KIC     ++SC++      +K +  KF
Sbjct: 1692 TQVKETDDKICFTMRPVVSCASGCTAVETKSKPYKF 1727


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 461 KVNLVKGVGTIVAPNKLKY 517
           KV ++ GVG   +PN  K+
Sbjct: 824 KVEMITGVGKATSPNLTKW 842


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 498 ATIVPTPLTRLTLFF*KSIAIPPVRPLTALALY 400
           A +V + LT +T+F      IPPV  + AL ++
Sbjct: 233 ALLVTSMLTLVTMFTGLKSDIPPVAYVKALDVW 265


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 564 N*NIFGINSLNTLLSVYFNLFGATIVPTPL 475
           N N +  N+ N    +Y+N+     VP P+
Sbjct: 92  NNNNYNNNNYNNYKKLYYNINYIEQVPVPI 121


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = +2

Query: 302 LHNSHLYHMAKHDFKQRGIETGEVTFDFKKMMEY 403
           LH+   YH       +R ++ G   + + ++M Y
Sbjct: 155 LHHGMAYHRGHRKDYERWVQQGAFGWSWDEVMPY 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,162
Number of Sequences: 438
Number of extensions: 3928
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)