Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0041
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 122 5e-29
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 56 8e-09
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 37 0.003
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 34 0.027
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 33 0.063
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 32 0.11
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 31 0.14
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 31 0.19
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 31 0.25
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 31 0.25
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 30 0.33
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 30 0.33
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 30 0.33
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 30 0.33
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 30 0.44
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 29 0.77
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 29 0.77
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 29 1.0
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 29 1.0
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 28 1.4
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 28 1.4
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 28 1.4
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 28 1.4
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.4
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 2.4
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 27 3.1
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 27 3.1
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 27 3.1
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 27 3.1
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 27 4.1
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 5.5
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 26 5.5
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 7.2
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 7.2
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 7.2
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 26 7.2
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 26 7.2
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 9.5
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 25 9.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.5
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 122 bits (295), Expect = 5e-29
Identities = 64/168 (38%), Positives = 88/168 (52%)
Frame = +2
Query: 251 TXNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGK 430
T N+V +Y+++GN WK +HD V +DWAP +NRIVTCS DRNAYV+ + DG
Sbjct: 30 TATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89
Query: 431 WATTLVLLRINRAATCVKWSPMENKFLSGQELD*YQFAILRRKIIGGCLSILRSPFVRL* 610
W TLVLLR+NRAAT V+WSP E+KF G ++ L+ P
Sbjct: 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTI 149
Query: 611 HLLIGIPITFCSSLALLTSKYESSLAYIKDIEDQPGPNVWGL*VAFRT 754
L P + K AY++D++ +P +VWG + F T
Sbjct: 150 LSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNT 197
Score = 104 bits (249), Expect = 2e-23
Identities = 41/62 (66%), Positives = 54/62 (87%)
Frame = +1
Query: 499 EQVSVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRV 678
++ +VGSGAR+IS+CYFE+EN+WWVSKH+K+P+RST+ S+DWHPNN+LL AG AD K V
Sbjct: 113 DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYV 172
Query: 679 FS 684
S
Sbjct: 173 LS 174
Score = 34.3 bits (75), Expect = 0.021
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Frame = +2
Query: 209 MSCMEQG*KSNCILTXNNEVHIY---KKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVT 379
++C++ KSN I+T + + + Y K+ WKQT L+ + + W+PN ++
Sbjct: 58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAV 117
Query: 380 CSVDRNAYVWTQGDDGKWATTLVLLR-INRAATCVKWSP 493
S R V + W + L R + + W P
Sbjct: 118 GSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = +1
Query: 547 FEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVF 681
+E++ N W VT +DW P + +V S D V+
Sbjct: 38 YEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY 82
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 55.6 bits (128), Expect = 8e-09
Identities = 27/91 (29%), Positives = 47/91 (51%)
Frame = +2
Query: 245 ILTXNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 424
+ + ++ V I +K +DW+ T L H+ V I W+ N N + TCS D++ ++W +D
Sbjct: 351 VASFDSVVSINEKIDDDWECTAALEGHENEVKCIAWSCNGNYLATCSRDKSVWIWEATED 410
Query: 425 GKWATTLVLLRINRAATCVKWSPMENKFLSG 517
++ VL + V W P E+ +SG
Sbjct: 411 DEFDCLAVLQEHTQDVKVVTWHPTEDLLVSG 441
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +2
Query: 257 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWA 436
+N + ++ +G+DW T L H V + ++PN N + + D N ++W + +
Sbjct: 444 DNSICFWRDDGDDWALTCQLQGHTNTVWALAFSPNGNTLASADNDGNVFLWIKISSNEDV 503
Query: 437 TTLVLLRINRAATCVKW 487
T+ I R A +W
Sbjct: 504 ATIDSTNILRPALQEEW 520
Score = 31.1 bits (67), Expect = 0.19
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +2
Query: 314 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATTLVLLRINRAATCVKWS 490
L EH V + W P + +V+ S D + W GDD WA T L + +S
Sbjct: 419 LQEHTQDVKVVTWHPTEDLLVSGSYDNSICFWRDDGDD--WALTCQLQGHTNTVWALAFS 476
Query: 491 PMENKFLS 514
P N S
Sbjct: 477 PNGNTLAS 484
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 607 VTSIDWHPNNILLVAGSAD 663
V + WHP LLV+GS D
Sbjct: 426 VKVVTWHPTEDLLVSGSYD 444
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 37.1 bits (82), Expect = 0.003
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Frame = +2
Query: 290 NDWKQTNNLVEHDLRVMGIDWAPNTNR----IVTCSVDRNAYVWTQGDDGKW-ATTLVLL 454
N+W + L H + WAP+ + + S D+N ++WT+ DG W T L
Sbjct: 193 NNWILEDTLAGHVDWTRDVAWAPSVGLTKTYLASASQDKNVFIWTKEGDGPWQKTPLTEE 252
Query: 455 RINRAATCVKWS 490
+ A V WS
Sbjct: 253 KFPDIAWRVSWS 264
Score = 31.9 bits (69), Expect = 0.11
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Frame = +2
Query: 257 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNT-NRIVTC-SVDRNAYVWTQGDDGK 430
+ V ++++ G W + + H V + WAP+ ++ C S D V DDG
Sbjct: 76 DGHVIVWRETGGVWSELMDHTAHQASVNAVSWAPHEYGALLACASSDGKVSVLEFKDDGS 135
Query: 431 WATTLVLLRINRAATCVKWSP 493
T + V WSP
Sbjct: 136 -CDTRIFTAHEPGCNAVCWSP 155
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 33.9 bits (74), Expect = 0.027
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 311 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
NL H L V+ +D + ++ +VTCS D+N +W
Sbjct: 571 NLYGHKLPVLSMDISYDSKLLVTCSADKNVKIW 603
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 311 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLR 457
++ H +M + + P+T TCS DR W DGK ++ LR
Sbjct: 613 SIFAHQDSIMEVTFQPDTYNFFTCSKDREVRYW----DGKSFDLILKLR 657
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 32.7 bits (71), Expect = 0.063
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 314 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATT 442
L+ H+ VM +DW P I++ S D + VW + G W T
Sbjct: 264 LMGHEDWVMSVDWHPTKEMILSSSADSSMIVWEPDTNTGIWVVT 307
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 607 VTSIDWHPNNILLVAGSADFKVRVF 681
V S+DWHP ++++ SAD + V+
Sbjct: 271 VMSVDWHPTKEMILSSSADSSMIVW 295
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +2
Query: 272 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ-GDDGKW 433
++K++ W Q ++ H V G+ W P ++ D+ ++ + D W
Sbjct: 352 LWKQDAGQWLQLPSISGHTKSVKGVAWDPEGKFYLSAGTDQTTRLFARFKKDNAW 406
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/71 (21%), Positives = 32/71 (45%)
Frame = +2
Query: 314 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 493
L H+ V+ ++++PN + +C D+ +W + K +L+ + CV+W P
Sbjct: 217 LAAHNGVVLCVNYSPNGVFLASCGRDKTIRIWDSTSNKK--KSLITINNVSPLNCVRWRP 274
Query: 494 MENKFLSGQEL 526
+ +L
Sbjct: 275 ANQQSRGSNQL 285
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 31.5 bits (68), Expect = 0.14
Identities = 20/87 (22%), Positives = 36/87 (41%)
Frame = +2
Query: 263 EVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATT 442
+V+++ E N+++ N +H +P+ I SVD VW D K +
Sbjct: 82 DVYVWNPETNEFRDLGNNAQHPSECWSSCISPDGQTIAFTSVDGRIAVWDNPSDCKISE- 140
Query: 443 LVLLRINRAATCVKWSPMENKFLSGQE 523
L + C+ +SP +SG +
Sbjct: 141 --LDTKGKFGLCIDYSPNGRFIVSGHQ 165
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 31.1 bits (67), Expect = 0.19
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +2
Query: 299 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 478
K+ L+ H V I W+P+ +++CS D++ +W D L + + +C
Sbjct: 246 KRVFRLIGHIDTVAYIRWSPDDRYLLSCSCDKSVILW----DAFTGEKLRDYKHGFSVSC 301
Query: 479 VKWSPMENKFLSG 517
W P F++G
Sbjct: 302 CCWLPDGLSFITG 314
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 30.7 bits (66), Expect = 0.25
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 320 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 424
EH+L +G+ W+ N+ + S D+N YVW+ D
Sbjct: 269 EHNL--LGVAWSRNSRFVGAGSSDKNVYVWSATGD 301
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 30.7 bits (66), Expect = 0.25
Identities = 17/78 (21%), Positives = 36/78 (46%)
Frame = +2
Query: 266 VHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 445
+ +YK +G T + HD ++ + + + ++T S D +W++GD G + L
Sbjct: 369 LRVYKVDGKAPVSTVSHA-HDNSIVALRYNLRISLLLTASSDTTVKLWSRGDAGAF-ECL 426
Query: 446 VLLRINRAATCVKWSPME 499
+ + C+ W+ E
Sbjct: 427 HVFSFSSPVNCIDWNLRE 444
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 598 RSTVTSIDWHPNNILLVAGSADFKVRVFSGLYQ 696
+ V S+ W + L AGSAD + +F L Q
Sbjct: 305 KGPVLSLKWSGTDTYLAAGSADGTITLFDQLKQ 337
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 30.3 bits (65), Expect = 0.33
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 299 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 412
K +L H+ +V +DW+P+ R+ + D+ +W+
Sbjct: 464 KMKFDLPGHEDQVFAVDWSPDGQRVASGGADKAVRIWS 501
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 607 VTSIDWHPNNILLVAGSADFKVRVFS 684
V ++DW P+ + +G AD VR++S
Sbjct: 476 VFAVDWSPDGQRVASGGADKAVRIWS 501
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 30.3 bits (65), Expect = 0.33
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWA 436
+N ++ + G ++ +L H V + ++PN R + D YV+ DGK
Sbjct: 168 DNSINFF--HGTPYRFNRSLRVHSKFVYDVRYSPNDERFASAGADGKVYVF----DGKTG 221
Query: 437 TTLVLLRINRAAT-CVKWSPMENKFLS 514
+ + ++ + + WSP ++F++
Sbjct: 222 DQVYEIDAHKGSIFSISWSPDSSQFVT 248
Score = 29.9 bits (64), Expect = 0.44
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +2
Query: 272 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
+Y +G Q + H + I W+P++++ VT S + +W
Sbjct: 213 VYVFDGKTGDQVYEIDAHKGSIFSISWSPDSSQFVTSSAGYSCKIW 258
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 30.3 bits (65), Expect = 0.33
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +2
Query: 257 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
+++V IY+ + L EH V+ ++W+ + ++ + SVD++A V+
Sbjct: 51 DSKVRIYEVQATGQSIGKALYEHQGPVLSVNWSRDGTKVASGSVDKSAKVF 101
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 30.3 bits (65), Expect = 0.33
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +2
Query: 278 KKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
+K +W+ L+ HD + + W+ ++ +V+ +D + VW
Sbjct: 118 EKHTENWRSYRRLLGHDNDIQDLCWSYDSQLVVSVGLDSSIIVW 161
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 29.9 bits (64), Expect = 0.44
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Frame = +2
Query: 356 PNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL-LRINRA-----ATCVKWSPMEN-KFLS 514
P +N IVTCS D ++W + + T+ L +++ + ATC+ + P N +FL
Sbjct: 303 PPSNNIVTCSTDGLVHIWEPDMFSRPSETICLSSQVDSSSQCIPATCLSFIPENNMEFLV 362
Query: 515 GQE 523
G E
Sbjct: 363 GAE 365
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 412
H VMG+ TN + +CS DR+ VW+
Sbjct: 249 HRDAVMGLAMRRGTNEMFSCSADRSIKVWS 278
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 29.1 bits (62), Expect = 0.77
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +2
Query: 344 IDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFLS 514
+DW+ N N +V +++RN YVW D G + L + VKWS + FLS
Sbjct: 186 LDWS-NLN-VVAVALERNVYVW-NADSGS-VSALAETDESTYVASVKWS-HDGSFLS 237
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 314 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
L EH +++ + W+PN ++ T S D +W
Sbjct: 345 LDEHIRQIVAMAWSPNGYQLATSSADDTVKIW 376
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 607 VTSIDWHPNNILLVAGSADFKVR 675
V ++DWHP+ LL +GS D V+
Sbjct: 209 VKTVDWHPSKGLLASGSKDNLVK 231
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
H++ V + ++PN ++ VT S D + VW
Sbjct: 163 HEMEVRDVAFSPNDSKFVTASDDGSLKVW 191
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 290 NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ 415
N+ Q ++L+ H V G+ +P I++CS D +W++
Sbjct: 391 NEPLQKSSLIGHTRPVFGVSISPQKEFILSCSEDGFTRLWSK 432
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +2
Query: 242 CILTXNNEVHIYKKEGNDWKQTNNLVEHDLRVM---GIDWAPNTNRIVTCSVDRNAYVW 409
C++T N+VH+ W+ TN + ++ + + N I + S + YVW
Sbjct: 115 CVVTSKNQVHLLSLSKGSWEVTNTISCEKTPLLFCATVQISGNEIYIASASAFQQIYVW 173
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 448 NKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPH 338
NK S I SLSP ++ + N ++ +G+ +NPH
Sbjct: 408 NKESIKQRIPSLSPPITRSYNAKHRPSLVLGTSVNPH 444
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +1
Query: 607 VTSIDWHPNNILLVAGSADFKVRVFS 684
V+SID++P LLV+GS D VR+++
Sbjct: 141 VSSIDFNPLGTLLVSGSWDETVRIWN 166
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -2
Query: 478 ASRCSVDTQKNKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPHHSKVVFH 317
A S T N + P PI +L PD T++ + ++ + +G+ PHHS + H
Sbjct: 142 ADNSSSSTTSNPNVAP-PISTL-PDPVATISSSSSSHLDMGAIHPPHHSSLPPH 193
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 314 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 412
L+ H V G ++P+ +++CS D +A +W+
Sbjct: 375 LLSHSGPVYGTTFSPDNKYLLSCSEDASARLWS 407
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 260 NEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPN 361
N+ +IYK+ + WK+ L H + I WAP+
Sbjct: 192 NDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPS 226
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +1
Query: 511 VGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFSGL 690
VG LIS C F +N + ++ ST T ++ N+LL + F V + L
Sbjct: 150 VGLLYALISTCIFVSQNIFGSKIFMEAKSHSTHTKKHYNKLNLLLYSSGVAFIVMIPVWL 209
Query: 691 YQ 696
YQ
Sbjct: 210 YQ 211
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 27.1 bits (57), Expect = 3.1
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +2
Query: 104 VVSPQLLQFHKNSGI*SEIENGTNVN-FW*LMRADNMSCMEQG*KSNCILTXNNEVHI-- 274
+ P L KN I +++ G N+N + +A +QG K + I T + HI
Sbjct: 98 IAIPHLSLEDKNEDIWTKVV-GINLNGAYYTAQAAGHHFKKQG-KGSLIFTASMSGHIAN 155
Query: 275 YKKEGNDWKQTNNLVEHDLRVMGIDWAP 358
+ ++ + T V+H R + ++WAP
Sbjct: 156 WPQQWASYHATKAAVKHLARALAVEWAP 183
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 586 KKPIRSTVTSIDWHPNNILLVAGSADFKVRVF 681
K P +V + WHPN +L G D +V+
Sbjct: 296 KLPHSDSVLTGSWHPNGNILATGGQDTTAKVW 327
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +3
Query: 408 GLKEMMGNGQLLLFFCVSTEQRLA*NGLPWRTSFCRVRS*ID 533
GLK G+ + F+C ++++ W S C + ID
Sbjct: 17 GLKSTFGDKTVTCFYCNKKKEKIRDGTSTWTCSICEATNHID 58
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 607 VTSIDWHPNNILLVAGSADFKVRVFS 684
V I +HP L V+G D+KV V++
Sbjct: 56 VRGIAFHPTQPLFVSGGDDYKVNVWN 81
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAAT-CVKWSPME 499
H+ + G+ W + ++ + D N +VW D + + L + AA + WSP +
Sbjct: 248 HEQEICGLQWDRSLGQLASGGNDNNLFVW----DYRSSRPLHKFEEHTAAVKAIGWSPHQ 303
Query: 500 NKFLS 514
L+
Sbjct: 304 RGILA 308
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
H LR+ + + P N ++ S+D++ VW
Sbjct: 546 HSLRIYSVLYEPERNICISGSMDKSIRVW 574
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 409 PDVSITVNRTRNNTVGVGSPINPHHSKVVFHKVVCLLP 296
PD I R R+++ + I+PHHS+ + ++ +P
Sbjct: 472 PDSDICFTRRRSDSNRTWTVIDPHHSQSFDNDILAEIP 509
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 583 IKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFS 684
+K I + VT+I PN+ + GS D +RV+S
Sbjct: 438 LKLEIENGVTAIAISPNDQFIAVGSLDQIIRVWS 471
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 317 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 451
V H L ++ I + N + +DR VW D +W T LVL
Sbjct: 592 VHHQLDILKIAVSENYKTFASVGLDRCLVVW---DLRQWCTKLVL 633
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 544 YFEKENNWWVSKHIKKPIRSTVTSID 621
YF+++N W + K KK ++ ++TS+D
Sbjct: 30 YFDEDNIWDLDK-FKKNLKVSITSLD 54
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 634 YWDANQ*MSQSNEWA 590
+WDAN +SQ N+W+
Sbjct: 135 HWDANVTLSQENKWS 149
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +2
Query: 314 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAAT-CVKWS 490
L H V G++W N N + + D VW + ++ L + AA + WS
Sbjct: 370 LTAHRQEVCGLEWNSNENLLASGGNDNALMVWDKFEE----KPLYSFHNHIAAVKAITWS 425
Query: 491 PMENKFLS 514
P + L+
Sbjct: 426 PHQRGILA 433
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 607 VTSIDWHPNNILLVAGSAD 663
V SI WHPNN +A + D
Sbjct: 216 VNSIAWHPNNATRLATAID 234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,462,027
Number of Sequences: 5004
Number of extensions: 74883
Number of successful extensions: 274
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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