Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0041
(803 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical ... 120 2e-27
AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical ... 44 1e-04
AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical... 37 0.015
AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily a... 36 0.045
Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical pr... 35 0.078
Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical pr... 34 0.10
Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical pr... 32 0.42
U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated p... 32 0.42
AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein. 32 0.42
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 32 0.55
Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical pr... 31 0.73
U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated p... 30 1.7
U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical pr... 30 1.7
AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical ... 30 1.7
AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore... 30 1.7
AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical... 30 1.7
AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical ... 30 2.2
U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical pr... 29 2.9
U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical pr... 29 2.9
U21321-1|AAG00051.1| 507|Caenorhabditis elegans Fizzy (cdc20 pr... 29 2.9
AF067942-4|AAG45573.2| 324|Caenorhabditis elegans Hypothetical ... 29 3.9
Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical pr... 28 6.8
U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical pr... 28 6.8
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr... 28 6.8
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 6.8
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 6.8
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 6.8
AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein. 28 6.8
AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore... 28 9.0
>AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical
protein Y79H2A.6 protein.
Length = 368
Score = 120 bits (288), Expect = 2e-27
Identities = 64/182 (35%), Positives = 92/182 (50%)
Frame = +2
Query: 257 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWA 436
+N++HI++ DW+ + L EHDL V G+DW TNRIV+CS D+NA+VWT D W
Sbjct: 35 SNDIHIFEWRNGDWQSIHTLSEHDLPVTGLDWGTKTNRIVSCSQDKNAFVWT-FDKNVWK 93
Query: 437 TTLVLLRINRAATCVKWSPMENKFLSGQELD*YQFAILRRKIIGGCLSILRSPFVRL*HL 616
LVL+R NRAAT VKWSP+ENKF G ++ ++ P
Sbjct: 94 PELVLVRFNRAATYVKWSPLENKFAVGSGAKLVSVCYYEKENDWWVSKQIKKPIRSTVTC 153
Query: 617 LIGIPITFCSSLALLTSKYESSLAYIKDIEDQPGPNVWGL*VAFRTTVYRVSQFAFQVAG 796
L ++ K AY+K+++++P PN WG + F + + V G
Sbjct: 154 LDWHSNNVLLAVGSCDFKCRVFSAYVKEVDEKPSPNPWGQKMPFGQLMSE-----YSVGG 208
Query: 797 WV 802
WV
Sbjct: 209 WV 210
Score = 107 bits (258), Expect = 7e-24
Identities = 44/59 (74%), Positives = 52/59 (88%)
Frame = +1
Query: 508 SVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFS 684
+VGSGA+L+S+CY+EKEN+WWVSK IKKPIRSTVT +DWH NN+LL GS DFK RVFS
Sbjct: 118 AVGSGAKLVSVCYYEKENDWWVSKQIKKPIRSTVTCLDWHSNNVLLAVGSCDFKCRVFS 176
Score = 39.1 bits (87), Expect = 0.004
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3
Query: 201 PITCHAWNKDRSQIAFS 251
PITCHAWNKDR+QIA S
Sbjct: 16 PITCHAWNKDRTQIAVS 32
>AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical
protein Y18D10A.9 protein.
Length = 337
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/83 (24%), Positives = 42/83 (50%)
Frame = +2
Query: 266 VHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 445
V +Y++E ++ + N L H+ V ++ + + TCS D++ + W Q +D ++ +
Sbjct: 91 VVVYQQEDGEFAEVNKLEGHESEVKCAVFSKSDEFLATCSRDKSVWFWQQDEDEDFSVSS 150
Query: 446 VLLRINRAATCVKWSPMENKFLS 514
+L + V W P E+ +S
Sbjct: 151 ILQPHTQDVKQVAWHPTEDLLVS 173
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 550 EKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVF 681
+++ ++ VS I +P V + WHP LLV+ S D +R +
Sbjct: 141 DEDEDFSVSS-ILQPHTQDVKQVAWHPTEDLLVSCSYDSSIRFY 183
>AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical
protein Y111B2A.17 protein.
Length = 778
Score = 37.1 bits (82), Expect = 0.015
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 290 NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ 415
++W + + ++ H L V I W P+ R++T S DR A ++T+
Sbjct: 596 SNWSKKSEIIGHQLTVTQIAWNPSGTRLLTVSRDRTAKLYTE 637
>AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily
assigned gene nameprotein 305 protein.
Length = 869
Score = 35.5 bits (78), Expect = 0.045
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +2
Query: 275 YKKEGNDWKQTN-NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 451
+K +D + N NL H + + W + +++ +C YVW + DD +W+ LV
Sbjct: 51 FKPTPDDLTRYNFNLRGHHNAIRMVTWNKSQSKLASCDASGIIYVWVRNDD-RWSVELVN 109
Query: 452 LRINRAATCVKWSP 493
R + + + WSP
Sbjct: 110 DRGVKVSD-LSWSP 122
>Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical
protein K08F9.2 protein.
Length = 600
Score = 34.7 bits (76), Expect = 0.078
Identities = 15/72 (20%), Positives = 31/72 (43%)
Frame = +2
Query: 308 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 487
N+ H +V+ + W+P+ R+ T S+D + +W G+ + + V+W
Sbjct: 519 NSWTFHTSKVLTVAWSPDNQRLATGSIDTSVIIWDMKKPGEHPVIIKGAHPMSSVNVVRW 578
Query: 488 SPMENKFLSGQE 523
+GQ+
Sbjct: 579 LDETTVVSAGQD 590
Score = 31.1 bits (67), Expect = 0.97
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 317 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
V H + + W+P+ +RI T S D++ +W
Sbjct: 234 VAHTGSIFALAWSPDQSRIATASADKSVKIW 264
>Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical
protein T04A8.7a protein.
Length = 681
Score = 34.3 bits (75), Expect = 0.10
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +2
Query: 290 NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC----SVDRNAYVWTQGDDGKWATTL 445
+ +KQ V+ D V G++WAP ++ + D+NA V+ + + GKW+ T+
Sbjct: 51 SSYKQFGLNVQPDNSVKGLEWAPAAEKLALIGDFNNWDQNANVYKKEEHGKWSITV 106
>Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical
protein C36B1.5 protein.
Length = 496
Score = 32.3 bits (70), Expect = 0.42
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 296 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 421
W+ L HD R++ +D +P+ + + + DR +W Q D
Sbjct: 454 WQPLRQLQGHDTRILCVDISPDGQWMCSSAFDRTFKLWAQSD 495
>U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated
protein 78, isoform a protein.
Length = 611
Score = 32.3 bits (70), Expect = 0.42
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 305 TNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
TN+ H +V + W+P+ R+ T S+D + VW
Sbjct: 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 563
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 317 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
V H V G+ W+P+ +I + S D+ +W
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein.
Length = 611
Score = 32.3 bits (70), Expect = 0.42
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 305 TNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
TN+ H +V + W+P+ R+ T S+D + VW
Sbjct: 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 563
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 317 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
V H V G+ W+P+ +I + S D+ +W
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 31.9 bits (69), Expect = 0.55
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 296 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 412
W + +L +H V G+ + N +VTCS+D++ V++
Sbjct: 453 WSEVVSLSDHSGPVTGVRFGENARSLVTCSLDKSLRVFS 491
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 547 FEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFS 684
+EKE K K I + V HP+NI ++ SAD +RV+S
Sbjct: 238 YEKEQVMQTFKGHNKKINAVVL----HPDNITAISASADSHIRVWS 279
>Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical
protein R06A4.9 protein.
Length = 809
Score = 31.5 bits (68), Expect = 0.73
Identities = 23/88 (26%), Positives = 35/88 (39%)
Frame = +2
Query: 326 DLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENK 505
D + G+ +AP + T S D A VW D ++ VL C+ W P +
Sbjct: 217 DEAIRGLAFAPTDVKFATASDDGTARVW---DFARYTEERVLRGHGAEVRCIDWHPTKGL 273
Query: 506 FLSGQELD*YQFAILRRKIIGGCLSILR 589
+G D Q + G CL+ L+
Sbjct: 274 IATGSR-DTQQPVKIWDPKSGSCLATLQ 300
>U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated
protein 78, isoform b protein.
Length = 517
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 317 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
V H V G+ W+P+ +I + S D+ +W
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical
protein F13H8.2 protein.
Length = 929
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +2
Query: 257 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
NN +Y N K +L H L V +D AP++ VT SVD++ VW
Sbjct: 565 NNTCSVYFV--NTLKFFVSLYGHSLPVTCVDIAPSSKLCVTGSVDKSVKVW 613
>AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical
protein Y54H5A.1 protein.
Length = 453
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +2
Query: 341 GIDWAP-NTNRIVTCSVDRNAYVWTQGDDGKWAT-TLVLLRINRAATCVKWSPMENKFLS 514
G+ W+ T + T + + Y+W + G+WA L ++ + WSP E L+
Sbjct: 233 GLAWSSLKTGDLATGDIIKKIYLWQMKEGGQWAVGANPLTGHKKSVEDLAWSPTETGLLA 292
Query: 515 GQELD 529
D
Sbjct: 293 SCSAD 297
>AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform a protein.
Length = 313
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 7/83 (8%)
Frame = +2
Query: 275 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNT------NRIVTCSVDRNAYVWTQGD-DGKW 433
Y N+W + H+ V + WAP + R+V+ D+N +W D +W
Sbjct: 135 YDNSSNEWISSKIQKCHEQGVNSVCWAPGSADPAAKKRLVSAGNDKNVKIWAFDDATNEW 194
Query: 434 ATTLVLLRINRAATCVKWSPMEN 502
L W P+ N
Sbjct: 195 ILEKTLAGHTDFVREAAWCPVTN 217
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 493 HGEQVSVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNN 636
+G ++ S I I ++ +N W+S I+K V S+ W P +
Sbjct: 117 YGLMLASASADGDIGILRYDNSSNEWISSKIQKCHEQGVNSVCWAPGS 164
>AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical
protein Y110A7A.8 protein.
Length = 504
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 421 ISLSPDVSITV-NRTRNNTVGVGS-PINPHHSKVVFHKVVCLLP 296
++ P ++ V +T+ N +G + NPHH + FH++V +P
Sbjct: 250 LATMPSCNVQVLGKTKKNLIGFSTVSTNPHHGFIYFHQLVQKMP 293
>AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical
protein Y43F4B.4 protein.
Length = 363
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 278 KKEGNDWKQTNNLVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQ 415
K +GN W+++ + H V + WA P +IV TCS DR +W +
Sbjct: 47 KPDGN-WRRSAHWKCHGGAVWRVIWAHPEFGQIVATCSYDRTIVIWEE 93
Score = 29.5 bits (63), Expect = 2.9
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 344 IDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 433
+ + P+ R+ TC+ D +W + DG W
Sbjct: 23 VSFDPHGRRMATCASDMTMAIWDRKPDGNW 52
>U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical
protein T27F7.2b protein.
Length = 722
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -1
Query: 674 RTLKSAEPATSKMLLGCQSIDVTVERMGFLICLDTHQLFSFSK*QI-DINLAPD 516
R + S +P TS G QS+++++ +G IC + L S S ++ DI+ PD
Sbjct: 165 RRIDSFQPTTSG---GMQSVELSISVLGVKICCEKTVLMSHSLRRVTDISARPD 215
>U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical
protein T27F7.2a protein.
Length = 732
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -1
Query: 674 RTLKSAEPATSKMLLGCQSIDVTVERMGFLICLDTHQLFSFSK*QI-DINLAPD 516
R + S +P TS G QS+++++ +G IC + L S S ++ DI+ PD
Sbjct: 175 RRIDSFQPTTSG---GMQSVELSISVLGVKICCEKTVLMSHSLRRVTDISARPD 225
>U21321-1|AAG00051.1| 507|Caenorhabditis elegans Fizzy (cdc20
protein family) homologprotein 1 protein.
Length = 507
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +2
Query: 218 MEQG*KSNCILTXNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRN 397
M G KS I+ N++V I + + W N H V ++W+ + N V+ S DR
Sbjct: 284 MTCGYKSGDIV--NHDVRISQHVVSSWGGDNG---HCRDVTALEWSADENMCVSGSSDRT 338
Query: 398 AYVW 409
A +W
Sbjct: 339 AKIW 342
>AF067942-4|AAG45573.2| 324|Caenorhabditis elegans Hypothetical
protein ZK6.6 protein.
Length = 324
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 563 IGGCLSILRSPFVRL*HLLIGIPI 634
+G C SPF+ L H +IGIP+
Sbjct: 255 LGSCFIFFLSPFLNLYHYVIGIPL 278
>Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical protein
F36D3.5 protein.
Length = 1152
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 269 HIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 424
HI+ E D K TN+ +E + + APNT ++ D N + T D
Sbjct: 931 HIWMDERTDNKITNDFMEKFQAITSDEAAPNTTHVIV-KTDENGVLETDDLD 981
>Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical
protein CC4.3 protein.
Length = 510
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 245 ILTXNNEVHIYKKEG-NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 421
IL+ N+ H+ + G K + H + + ++ N I++CS D + VW G
Sbjct: 322 ILSGGND-HVVRVHGMKSGKCLKEMRGHSSYITDVRYSDEGNHIISCSTDGSIRVW-HGK 379
Query: 422 DGKWATT 442
G+ +T
Sbjct: 380 SGECLST 386
>Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical
protein R01H10.3d protein.
Length = 495
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Frame = +2
Query: 323 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG----KWATTLVLLRINRAATCVKW 487
H + + W+P N N I +CS D VW D G + L + + W
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRGLNRNLSEPAVELTGHQKRVNTIAW 137
Query: 488 SPMENKFL 511
P+ N L
Sbjct: 138 HPVANNVL 145
>Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical
protein R01H10.3c protein.
Length = 607
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Frame = +2
Query: 323 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG----KWATTLVLLRINRAATCVKW 487
H + + W+P N N I +CS D VW D G + L + + W
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRGLNRNLSEPAVELTGHQKRVNTIAW 137
Query: 488 SPMENKFL 511
P+ N L
Sbjct: 138 HPVANNVL 145
>Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical
protein R01H10.3b protein.
Length = 538
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Frame = +2
Query: 323 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG----KWATTLVLLRINRAATCVKW 487
H + + W+P N N I +CS D VW D G + L + + W
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRGLNRNLSEPAVELTGHQKRVNTIAW 137
Query: 488 SPMENKFL 511
P+ N L
Sbjct: 138 HPVANNVL 145
>Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical
protein R01H10.3a protein.
Length = 605
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Frame = +2
Query: 323 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG----KWATTLVLLRINRAATCVKW 487
H + + W+P N N I +CS D VW D G + L + + W
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRGLNRNLSEPAVELTGHQKRVNTIAW 137
Query: 488 SPMENKFL 511
P+ N L
Sbjct: 138 HPVANNVL 145
>U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical
protein K10D2.1b protein.
Length = 669
Score = 28.3 bits (60), Expect = 6.8
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +1
Query: 607 VTSIDWHPNNILLVAGSADFKVRVFS 684
V +++W PN L +GS D+++ +++
Sbjct: 136 VLTVEWSPNGKYLASGSIDYRIIIYN 161
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/78 (24%), Positives = 35/78 (44%)
Frame = +2
Query: 296 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAAT 475
+K+ L H + V+ ++W+PN + + S+D ++ T VL I
Sbjct: 123 YKECCVLRGHSMEVLTVEWSPNGKYLASGSIDYRIIIYNARKLPDRIT--VLNDIQLPVK 180
Query: 476 CVKWSPMENKFLSGQELD 529
+ W P+ K+L+ E D
Sbjct: 181 GLSWDPI-GKYLASLEGD 197
>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
protein K10D2.1a protein.
Length = 1223
Score = 28.3 bits (60), Expect = 6.8
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +1
Query: 607 VTSIDWHPNNILLVAGSADFKVRVFS 684
V +++W PN L +GS D+++ +++
Sbjct: 424 VLTVEWSPNGKYLASGSIDYRIIIYN 449
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/78 (24%), Positives = 35/78 (44%)
Frame = +2
Query: 296 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAAT 475
+K+ L H + V+ ++W+PN + + S+D ++ T VL I
Sbjct: 411 YKECCVLRGHSMEVLTVEWSPNGKYLASGSIDYRIIIYNARKLPDRIT--VLNDIQLPVK 468
Query: 476 CVKWSPMENKFLSGQELD 529
+ W P+ K+L+ E D
Sbjct: 469 GLSWDPI-GKYLASLEGD 485
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 445 CSSAYQPSSDLREMVSHGEQVSVGSGARLISI 540
C S P+ D+R + SHG Q+S G R+I I
Sbjct: 1460 CVSEGYPAPDVRWVDSHGNQLSDGPLLRIIDI 1491
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 445 CSSAYQPSSDLREMVSHGEQVSVGSGARLISI 540
C S P+ D+R + SHG Q+S G R+I I
Sbjct: 1523 CVSEGYPAPDVRWVDSHGNQLSDGPLLRIIDI 1554
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 445 CSSAYQPSSDLREMVSHGEQVSVGSGARLISI 540
C S P+ D+R + SHG Q+S G R+I I
Sbjct: 1523 CVSEGYPAPDVRWVDSHGNQLSDGPLLRIIDI 1554
>AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein.
Length = 510
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 245 ILTXNNEVHIYKKEG-NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 421
IL+ N+ H+ + G K + H + + ++ N I++CS D + VW G
Sbjct: 322 ILSGGND-HVVRVHGMKSGKCLKEMRGHSSYITDVRYSDEGNHIISCSTDGSIRVW-HGK 379
Query: 422 DGKWATT 442
G+ +T
Sbjct: 380 SGECLST 386
>AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform b protein.
Length = 211
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 493 HGEQVSVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNN 636
+G ++ S I I ++ +N W+S I+K V S+ W P +
Sbjct: 117 YGLMLASASADGDIGILRYDNSSNEWISSKIQKCHEQGVNSVCWAPGS 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,250,620
Number of Sequences: 27780
Number of extensions: 424578
Number of successful extensions: 1052
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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