Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0041
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 404 VWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFLSG 517
           +W   +DGK       L+ +     V++SPME   L G
Sbjct: 9   LWCPDNDGKMVDLTQCLQESSTGQSVEFSPMELNALVG 46


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 645 EQNVIGMPINRCHSRTNGLLNMLR 574
           E   IG  +++CH+R     NM R
Sbjct: 700 EPQPIGKALSKCHNRNVTTCNMFR 723


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 530 NLAPDPTETCSPWETISRKSLLG 462
           N +P P E C+   TI+ +S  G
Sbjct: 742 NASPSPAEQCASTTTITARSPQG 764


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,333
Number of Sequences: 438
Number of extensions: 5146
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)