Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0038
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   2.3  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    27   4.1  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   7.1  

>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -2

Query: 256 PLTRGSHIRCADFFDAPQSRWNE----R*TGAVGFYPYSH*NYTSKNLSA*HFQLSPNTD 89
           PL R S I CA +F   +SR+NE    R T  V FY  +    TS+N    H+     T+
Sbjct: 2   PLGRSSWICCAKYFVNTKSRFNEILPPRFTLIVSFYSMN----TSENDPDGHYDFPEMTE 57

Query: 88  TTAQR 74
             + R
Sbjct: 58  HHSDR 62


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 256 PLTRGSHIRCADFFDAPQSRWNER*TGAVGFYPYSH*NYTSKNLS 122
           P T  S +  ++ FD+  + +N   TG    Y +   +YT+ N S
Sbjct: 314 PSTPSSAVTLSNGFDSQSNAYNNSGTGPPMLYKFPQRSYTAPNTS 358


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 138 QAKTFPLNISN*VQIQTPPHSVRDS 64
           Q  +FPL   N  Q + P HS+RD+
Sbjct: 501 QPHSFPLRKQNVAQSEFPKHSLRDN 525


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,864
Number of Sequences: 5004
Number of extensions: 60585
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)