Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0038
         (791 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52208| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37)                   28   7.5  

>SB_52208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 447 SANSQTCDGVI-RAFATRNSLEFT*SSECPSRSGCIKGAYWSCRR 316
           S+  + C G++ R FA+  ++E   S++C   S    G   +CRR
Sbjct: 350 SSQKRACSGILSRPFASSETIEMENSNDCKQGSLSRAGGEVNCRR 394


>SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = -3

Query: 366 CPSRSGCIKGAYWSCRRGHAPP-CTQRRRHPXADXRSDRSPGXLISGALTSLTLPNLVGM 190
           CP  S C+ G    CR G+  P C+Q         R  +  G  I    ++L LP ++G 
Sbjct: 233 CPIESSCLGGLESRCREGYTGPLCSQ------CVKRQYKQAGKCIRCPSSNLILP-ILGK 285

Query: 189 NGRLAQSAFIHTVTKTIQAKT 127
              +A    +   + T++  T
Sbjct: 286 VAAIAAMVVLFIRSSTVEGDT 306


>SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37)
          Length = 1041

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -3

Query: 312 HAPPCTQRRRHPXADXRSDRSPGXL-ISGALTSLTLPNLVGMNGRLAQSAFIHTVTKT 142
           HAP     R HP    ++  +PG + +SG  +   LP     NG   ++     V KT
Sbjct: 577 HAPAALSVRTHPPITAKARNNPGTIRLSGISSFDVLPLRTQFNGVTQETMLKFAVRKT 634


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,485,872
Number of Sequences: 59808
Number of extensions: 459374
Number of successful extensions: 829
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)