Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0038
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068708-11|AAC17757.1|  136|Caenorhabditis elegans Hypothetical...    31   1.2  
Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z54235-1|CAA90971.1|  416|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U70850-1|AAB09124.2|  104|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>AF068708-11|AAC17757.1|  136|Caenorhabditis elegans Hypothetical
           protein C18G1.1 protein.
          Length = 136

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -1

Query: 164 LSIQSLKLYKQKPFRLTFPTESKYRHHRTAYEIVL 60
           +S+  LK Y +KP R    TE++ +H+RT + I+L
Sbjct: 45  ISLFPLKDYSRKPGRGPQRTEAEMKHYRTVFYIIL 79


>Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical
           protein C14A4.3 protein.
          Length = 603

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +2

Query: 488 HFYGTYIVSPSNITIDHLH*LIGNVLNGKNLFVFYVILGINNFNQYIFA 634
           H++G  +++P NI + ++    G  L G+    FY+    NN+N  IFA
Sbjct: 267 HYFGKTVLAPLNIFLYNVVSGPGPSLYGEEPLSFYIKNLFNNWNIVIFA 315


>Z54235-1|CAA90971.1|  416|Caenorhabditis elegans Hypothetical
           protein C09G9.1 protein.
          Length = 416

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 413 VLSRHETASSSHRVANVXPVPAASKAHT 330
           VLSR +TAS S   A V P PA+    T
Sbjct: 175 VLSRRQTASRSSHAAEVTPPPASYAPET 202


>U70850-1|AAB09124.2|  104|Caenorhabditis elegans Hypothetical
           protein F28F9.3 protein.
          Length = 104

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 532 YRNIRWAYNISSIKMALKLN-HIFLISKLFSKLPNL 428
           Y  IRW Y ISSI MA  L+ H  L+  L   LP +
Sbjct: 16  YFGIRWDYRISSINMASLLDLHSLLVLPL-GDLPKI 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,333,736
Number of Sequences: 27780
Number of extensions: 347763
Number of successful extensions: 792
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)