Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0038
         (791 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15680.1 68418.m01834 expressed protein                             29   4.7  

>At5g15680.1 68418.m01834 expressed protein 
          Length = 2151

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 166  SRLRQSTVHSNEIGERQRSQRTGYEXPG*AVRXXVRXGVPPPLCAG 303
            S + +   ++N++GE QRS+  GYE P  +       GV P +  G
Sbjct: 1810 SSMPRDEFNTNDLGEFQRSESRGYEMPPSSGTLPKFEGVQPLVLKG 1855


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,026,840
Number of Sequences: 28952
Number of extensions: 308231
Number of successful extensions: 558
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)