Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0037
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 130 2e-31
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 130 2e-31
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 107 1e-24
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 107 1e-24
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 99 4e-22
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 88 2e-18
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 66 6e-12
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 63 4e-11
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 60 5e-10
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 58 1e-09
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 54 3e-08
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 50 4e-07
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 49 9e-07
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 47 3e-06
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 46 5e-06
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 44 2e-05
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 40 3e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 40 6e-04
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 27 2.4
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 3.2
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 27 3.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.5
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 26 5.5
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 26 7.3
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 25 9.6
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ... 25 9.6
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 130 bits (315), Expect = 2e-31
Identities = 58/65 (89%), Positives = 62/65 (95%)
Frame = +2
Query: 62 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 241
+R+KLVIVGDGACGKTCLLIVFSK FPEVYVPTVFENYVAD+EVDG+ VELALWDTAGQ
Sbjct: 5 LRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQ 64
Query: 242 EDYDR 256
EDYDR
Sbjct: 65 EDYDR 69
Score = 103 bits (248), Expect = 2e-23
Identities = 46/76 (60%), Positives = 58/76 (76%)
Frame = +1
Query: 277 DTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINELRKMK 456
D+ VIL+CF+VDSPDSL+N+ EKW EV HFC ++PI+LV K DLRNDP I EL K
Sbjct: 77 DSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADLRNDPKIIEELSKTN 136
Query: 457 QEPVKPQEGRAMAEKI 504
Q PV +EG+A+A+KI
Sbjct: 137 QHPVTTEEGQAVAQKI 152
Score = 49.6 bits (113), Expect = 5e-07
Identities = 29/48 (60%), Positives = 34/48 (70%), Gaps = 9/48 (18%)
Frame = +3
Query: 510 FAYLECSAKSKEGVREVFETATRAAL-----QVK----KKKKTRCSLL 626
+ YLECSAK+ EGVREVFE+ATRAA+ +VK KKK RC LL
Sbjct: 155 YKYLECSAKTNEGVREVFESATRAAMLKHKPKVKPSSGTKKKKRCILL 202
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 130 bits (314), Expect = 2e-31
Identities = 57/65 (87%), Positives = 62/65 (95%)
Frame = +2
Query: 62 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 241
+R+KLVIVGDGACGKTCLLIVFSK FPEVYVPTVFENYVAD+EVDG+ +ELALWDTAGQ
Sbjct: 5 LRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQ 64
Query: 242 EDYDR 256
EDYDR
Sbjct: 65 EDYDR 69
Score = 105 bits (252), Expect = 7e-24
Identities = 45/76 (59%), Positives = 60/76 (78%)
Frame = +1
Query: 277 DTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINELRKMK 456
D+ V+L+CFSVD+P+SL+N+ EKW EV HFC N+PI+LVG K DLRNDP TI EL K
Sbjct: 77 DSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDLRNDPKTIEELSKTS 136
Query: 457 QEPVKPQEGRAMAEKI 504
Q+P+ +EG+ +A+KI
Sbjct: 137 QKPITFEEGQVVAQKI 152
Score = 44.4 bits (100), Expect = 2e-05
Identities = 25/46 (54%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Frame = +3
Query: 510 FAYLECSAKSKEGVREVFETATRAAL-------QVKKKKKTRCSLL 626
+ YLECSAK EGV EVFETA RA++ K KKK C LL
Sbjct: 155 YKYLECSAKLNEGVNEVFETAARASMLKFKPASVPKTKKKKHCILL 200
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 107 bits (258), Expect = 1e-24
Identities = 50/75 (66%), Positives = 57/75 (76%), Gaps = 2/75 (2%)
Frame = +2
Query: 38 ESSGPMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQV 211
+ SG + KKLV+VGDG CGKTCLLIVFS FPE YVPTVFENY+ DI + K +
Sbjct: 5 KKSGSKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVI 64
Query: 212 ELALWDTAGQEDYDR 256
ELALWDTAGQE+YDR
Sbjct: 65 ELALWDTAGQEEYDR 79
Score = 86.2 bits (204), Expect = 5e-18
Identities = 38/81 (46%), Positives = 53/81 (65%)
Frame = +1
Query: 277 DTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINELRKMK 456
+++VIL+CFS+D P SL N+ EKW PEV+HFCP PI+LVG K DLR D LR
Sbjct: 87 NSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIVLVGLKADLRKDRNATEVLRTQG 146
Query: 457 QEPVKPQEGRAMAEKINGLHI 519
PV Q+ +++A +N ++
Sbjct: 147 LTPVTYQQAQSVALSMNAPYV 167
Score = 31.5 bits (68), Expect = 0.15
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 516 YLECSAKSKEGVREVFETATRAALQVKKK---KKTRCSLL 626
Y+ECSAK GV EVF+ A L +KK K C +L
Sbjct: 166 YVECSAKENTGVNEVFQLA--VGLTIKKSFSFSKKSCVIL 203
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 107 bits (258), Expect = 1e-24
Identities = 48/65 (73%), Positives = 55/65 (84%)
Frame = +2
Query: 62 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 241
IR+KLV+VGDGACGKT LL VF+ FP YVPTVFENYV+D VDGK V+LALWDTAGQ
Sbjct: 7 IRRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQ 66
Query: 242 EDYDR 256
E+Y+R
Sbjct: 67 EEYER 71
Score = 88.2 bits (209), Expect = 1e-18
Identities = 38/73 (52%), Positives = 51/73 (69%)
Frame = +1
Query: 286 VILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINELRKMKQEP 465
+IL+ F++DSPDSLEN+ KW E+ CPNVP ILVG K DLR+DP I E+R+ Q
Sbjct: 82 IILVGFAIDSPDSLENVSTKWIEEINTLCPNVPFILVGMKADLRSDPVAIEEMRRRNQNF 141
Query: 466 VKPQEGRAMAEKI 504
VK Q+ +A++I
Sbjct: 142 VKSQQAELVAQRI 154
Score = 39.9 bits (89), Expect = 4e-04
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 4/41 (9%)
Frame = +3
Query: 516 YLECSAKSKEGVREVFETATRAALQVK----KKKKTRCSLL 626
Y+ECS+ + +GV +VFE ATRAAL V+ K T+C ++
Sbjct: 159 YMECSSLTGDGVDDVFEAATRAALTVRDSENDKSSTKCCII 199
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 99 bits (238), Expect = 4e-22
Identities = 43/65 (66%), Positives = 54/65 (83%)
Frame = +2
Query: 62 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 241
I +K+VI+GDGA GKT LL VF+K FP+VY PT+FENY+ DI VDG +EL+LWDTAGQ
Sbjct: 12 IYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQ 71
Query: 242 EDYDR 256
E+YD+
Sbjct: 72 EEYDQ 76
Score = 67.7 bits (158), Expect = 2e-12
Identities = 36/79 (45%), Positives = 49/79 (62%)
Frame = +1
Query: 277 DTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINELRKMK 456
DT VI++CF+VDS DSLEN+ KW PEV CP V ++LV K DLR +E +
Sbjct: 84 DTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKLVLVALKCDLRG----ADEEQVDH 139
Query: 457 QEPVKPQEGRAMAEKINGL 513
+ + +EG A A+KIN +
Sbjct: 140 SKIIDYEEGLAAAKKINAV 158
Score = 33.5 bits (73), Expect = 0.036
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 516 YLECSAKSKEGVREVFETATRAALQVKKK 602
YLECSAK GV E F A R AL + +
Sbjct: 160 YLECSAKLNRGVNEAFTEAARVALAAQPR 188
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 87.8 bits (208), Expect = 2e-18
Identities = 36/78 (46%), Positives = 52/78 (66%)
Frame = +1
Query: 280 TDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPATINELRKMKQ 459
TDV L+CFSV SP S EN+ EKW PEV H CP VP ++VG + DLR+DP+ +L + Q
Sbjct: 75 TDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLIVGTQIDLRDDPSVQQKLARQHQ 134
Query: 460 EPVKPQEGRAMAEKINGL 513
P+ ++G +A ++ +
Sbjct: 135 HPLTHEQGERLARELGAV 152
Score = 83.4 bits (197), Expect = 3e-17
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = +2
Query: 71 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 250
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDY 64
Query: 251 DR 256
DR
Sbjct: 65 DR 66
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/39 (46%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Frame = +3
Query: 516 YLECSAKSKEGVREVFETATRAALQ--VKKKKKTRCSLL 626
Y+ECSA +++G++ VF+ A AAL V KKK++C +L
Sbjct: 154 YVECSALTQKGLKNVFDEAIVAALDPPVPHKKKSKCLVL 192
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 66.1 bits (154), Expect = 6e-12
Identities = 27/61 (44%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Frame = +2
Query: 71 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 247
KL+++GD GK+CLL+ FS+D F ++ T+ ++ + IE+DGK+++L +WDTAGQE
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70
Query: 248 Y 250
+
Sbjct: 71 F 71
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 63.3 bits (147), Expect = 4e-11
Identities = 26/61 (42%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Frame = +2
Query: 71 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 247
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + E++GK V+L +WDTAGQE
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 248 Y 250
+
Sbjct: 70 F 70
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 59.7 bits (138), Expect = 5e-10
Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +2
Query: 71 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 247
K+VI+GD GKTCL+ F +F Y T+ +++ D+ VD K V L LWDTAGQE
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 248 YDRCG 262
+ G
Sbjct: 70 FQSLG 74
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 516 YLECSAKSKEGVREVFETATRAALQ 590
+ E SAK V ++FET +R AL+
Sbjct: 154 HFEASAKENTNVTDLFETVSRLALE 178
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 58.0 bits (134), Expect = 1e-09
Identities = 27/60 (45%), Positives = 38/60 (63%)
Frame = +2
Query: 71 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 250
KLV+VGDG GK+ L I + F + Y PT+ ++Y E+DG+ L + DTAGQE+Y
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQEEY 69
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 53.6 bits (123), Expect = 3e-08
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Frame = +2
Query: 53 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVD-GKQVELALW 226
+ I +KLV++GD A GK+ L++ F KDQF + T+ ++ + +D V+L +W
Sbjct: 10 VVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIW 69
Query: 227 DTAGQEDY 250
DTAGQE Y
Sbjct: 70 DTAGQERY 77
Score = 25.4 bits (53), Expect = 9.6
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +3
Query: 453 EARACETAGRPGYG*KD*RFAYLECSAKSKEGVREVFETATRAALQVKKK 602
E RA E A Y + + E SAK+ E V E+F TA L ++ K
Sbjct: 135 ERRAVEKADAEAYA-AEANLLFFETSAKTAENVNELF-TAIAKKLPLEDK 182
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 50.0 bits (114), Expect = 4e-07
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Frame = +2
Query: 59 AIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 232
++RK KLV +G+ + GKT L+ F DQF Y T+ ++++ + ++ + V L LWDT
Sbjct: 8 SLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 67
Query: 233 AGQEDY 250
AGQE +
Sbjct: 68 AGQERF 73
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 48.8 bits (111), Expect = 9e-07
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +2
Query: 71 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 247
K++I+G+ GKT ++ + +F + Y T+ +++ ++ VD K V L LWDTAGQE
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQER 69
Query: 248 YDRCG 262
+ G
Sbjct: 70 FQSLG 74
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 516 YLECSAKSKEGVREVFETATRAALQ 590
Y E SAK V+E FET + AL+
Sbjct: 153 YFETSAKEAINVQEAFETVAKLALE 177
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 47.2 bits (107), Expect = 3e-06
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +2
Query: 71 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 247
K V++GD GK+ LL+ F++++F T+ + +I +D K+++ +WDTAGQE
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 248 Y 250
Y
Sbjct: 72 Y 72
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 46.4 bits (105), Expect = 5e-06
Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 53 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 229
MA I+ +++ ++G + GK+ L + + ++ F E Y PT+ + +I+ G++ + D
Sbjct: 1 MAPIKSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIID 60
Query: 230 TAGQEDY 250
TAGQ++Y
Sbjct: 61 TAGQDEY 67
Score = 25.8 bits (54), Expect = 7.3
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 292 LMCFSVDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRNDPATINE 441
++ +S+ S S E + + H VPI++VGNK DL A E
Sbjct: 82 VLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQRAVTAE 132
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 44.4 bits (100), Expect = 2e-05
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Frame = +2
Query: 71 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTA 235
K+V+ G GK+CLL F K+Q+ + TV ++ + I G K+++L +WDTA
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 236 GQEDYDRCGRS 268
GQE + R+
Sbjct: 71 GQEKFRSVARN 81
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +2
Query: 71 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 247
K+ ++GD + GKT L++ + + F E T+ N++ I + ++ ++WD GQ +
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 248 Y 250
+
Sbjct: 72 F 72
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 39.5 bits (88), Expect = 6e-04
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 71 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQE 244
KLV+VGDG GKT + +F + Y+ T+ E + + ++ +WDTAGQE
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQE 69
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 292 LMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 417
++ F V S + +N+P W V+ C N+PI+L GNK D++
Sbjct: 86 IIMFDVTSRITYKNVPHWWRDLVR-VCENIPIVLCGNKVDVK 126
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = -3
Query: 234 AVSHRASSTCFPSTSMSAT*FSNTVGTYTSGN*SLLNTISR 112
A S+ ++S +PSTSMSA+ S + TS + S ++ SR
Sbjct: 500 ATSYSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSR 540
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 292 LMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK-KDLRN 420
++C S E + W P + NVPI+L NK +DL N
Sbjct: 77 VICLVYSDNYSYERVSIFWLPYFRSLGVNVPIVLCENKSEDLDN 120
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -2
Query: 232 GIPQSQFHLFSIHFDVGNVILKHCRHVYFRELILAEH 122
G QS+ +IH + +++H ++ YF++L+ +H
Sbjct: 325 GSLQSEHTSLNIHTGLAETLVQHTKNNYFQKLLQLQH 361
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 35 PESSGPMAAIRKK--LVIVGDGACGKTCLL 118
P + I KK ++VGD A GKTC+L
Sbjct: 1857 PVLESVITCINKKWPCILVGDTATGKTCIL 1886
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = -3
Query: 324 RIRRVHREAH----EDHIRIWIRERPQRS*SSWPAVSHRASSTCFPSTSMSAT*FSNTV 160
R R V H E + W E P S+W + +ASS P + S T FS ++
Sbjct: 529 RCRMVKNNEHGWVVETPTKSWSFEDPNGPASAWVELLDKASSISLPFGNHSVTSFSRSI 587
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 120 ISRHVLPHAPSPTITNFLRIAAIGPED 40
I H+LP+ TITNF R+ G D
Sbjct: 188 IENHLLPNELPLTITNFFRLGTPGFTD 214
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 319 DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 417
DS E + WTPE+ + V +I + +K +R
Sbjct: 367 DSKEQLLAYWTPEITNQPARVALISIPSKSTIR 399
>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 53 MAAIRKKLVIVGDGACGKT-CLLIVFSKDQFPEVYVPTVFENYVADIEV 196
M K L I+G G T C +FS++ + ++ E ++ DIEV
Sbjct: 214 MHCFHKLLQILGIREIGDTQCGFKLFSREAYQSIFPRMHVEGWIFDIEV 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,408,310
Number of Sequences: 5004
Number of extensions: 69083
Number of successful extensions: 251
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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