Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0036
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M... 32 0.065
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 28 1.1
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 4.3
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 26 4.3
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 26 4.3
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 5.6
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 5.6
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 26 5.6
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 25 7.5
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 25 9.9
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 25 9.9
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 25 9.9
>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
3|||Manual
Length = 325
Score = 32.3 bits (70), Expect = 0.065
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +2
Query: 266 SNVDLGGLAQIIISQNYIGSVVKQCLXXXXXXXXXXXXXXXXVFGVTTVVNITKRKNEPS 445
+NV+L LA +I+SQ +GS VK + + +V+N+ R++EP
Sbjct: 99 TNVNLSALADLILSQPLLGSTVK------------VDGNNSDPYAMLSVINLNTRRDEPV 146
Query: 446 VAQIRE-LLTKLSQENA 493
+ Q+ ++++L++ N+
Sbjct: 147 IKQLTSYIISRLAKSNS 163
Score = 29.9 bits (64), Expect = 0.35
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +3
Query: 63 CLIKRTRKLTQTAKATKEQDSGSEKDSDFDSDGNYVGEKXLQADFEGRNPEDSDFHGIKQ 242
C + T K K +E D+ V + DFE +P+ DFH K
Sbjct: 30 CFVLFTNIKLDVRKMAKRHAEENE-DTVMSESLKVVDTDFINVDFEFFDPQPIDFHAFKN 88
Query: 243 LLRQ 254
LL+Q
Sbjct: 89 LLKQ 92
Score = 29.1 bits (62), Expect = 0.61
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 493 RSQNQKLIKYILADDSQHTGLVINERILNIPAAISVPI 606
R +N+ L K + + GL++NER++N+P + P+
Sbjct: 164 RLENE-LQKLLEPNSGSQVGLIVNERLINMPVQVIPPM 200
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 234 YRGSHYLLGYVLRNQPVAXFHRHSCRLNQNQNLFR 130
+ S L Y+LR+ P + F+R+S + N N FR
Sbjct: 9 FTSSSSLPCYILRHLPFSNFNRYSTASHDNVNAFR 43
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/45 (22%), Positives = 25/45 (55%)
Frame = +3
Query: 90 TQTAKATKEQDSGSEKDSDFDSDGNYVGEKXLQADFEGRNPEDSD 224
+ + + +E+++ SE+DS+ + E +++ E + E+SD
Sbjct: 83 SDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESD 127
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 66 LIKRTRKLTQTAKATKEQDSGSEKDSDFDSDGNYVGEKXLQADFEGRNPED 218
L++R RK+ K EQ S E D D + ++ +++D +NP++
Sbjct: 119 LLQRFRKVRIAEKKDSEQPSSHEIHLTDDDDKTTLQKQMVESDQLKKNPQE 169
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -3
Query: 471 VSNSLICATLGSFFLL-VIFTTVVTPKT 391
+S+S IC+ +G FF L + +++P+T
Sbjct: 324 ISDSTICSLIGGFFFLRFVNPAIISPQT 351
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 227 PRY*AATEAMFLKSNVDLGGLAQIIISQNYIGSVV 331
P Y A L SN + + Q+I+ QN++G +V
Sbjct: 1332 PLYALGITASLLHSNQQVSNI-QVIVQQNFLGMIV 1365
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 256 HCLSSCLIPWKSLSSGLRPSKSACSXFSPT*LPSESKSESFSLPES 119
HC+SS L L+S L+ + +P LPS +K+ S +S
Sbjct: 357 HCISSFLQSSNELASSLKKQLPSFLAQTPLTLPSNTKTPPASARQS 402
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +3
Query: 99 AKATKEQDSGSEKDSDFDSDGNYVGEKXLQADFEGRNPEDSDFHG 233
A +E++ E + +FD +G E+ + D +G D D G
Sbjct: 174 ADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEG 218
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -1
Query: 653 YFSYELSQVQSVVMQIMGTLIAAGMFSILSLITRPVC*ESSARIYLINFWFWDLHSP 483
YF ++S++Q + LI+ +IL+L+ P+ R +L+ F FW H P
Sbjct: 352 YFFLDISKLQMTSLTFF-LLIST---TILTLVPAPLV---EFRYFLLPFLFWRFHLP 401
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -2
Query: 148 KSESFSLPESCSFVAFAVCVNFLVLFIRHFSKINKR 41
+ S SLP+ +F+A + ++ F+R+F + K+
Sbjct: 318 RDNSASLPDDPAFIALGITNDYPDSFVRYFYEEQKK 353
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 401 VTTVVNITKRKNEPSVAQIRELLTKLSQENADPRTKN 511
V+T + + +N + ELL +L+ E+ DP N
Sbjct: 147 VSTFLELMNHENADITITVLELLIELTDEDVDPDALN 183
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 75 RTRKLTQTAKAT-KEQDSGSEKDSDFDSDGNYVGE 176
R LT+ K+T EQ S SEK++ + Y+GE
Sbjct: 9 RKEFLTKLYKSTPSEQTSRSEKETWLEEKSKYLGE 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,504
Number of Sequences: 5004
Number of extensions: 38250
Number of successful extensions: 141
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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