Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0036
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0724 - 35757228-35757323,35757837-35757893,35757983-357580...    36   0.022
04_04_0877 + 29018168-29018279,29019013-29019230,29019333-29019713     30   1.5  
01_01_0231 + 1951047-1951499                                           30   1.9  
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457           30   1.9  
01_01_0229 - 1943473-1943922                                           29   2.5  
05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309...    29   3.3  
01_06_1193 - 35306608-35306777,35306869-35306890,35306988-353069...    29   4.4  

>03_06_0724 -
           35757228-35757323,35757837-35757893,35757983-35758075,
           35758271-35758336,35758444-35758653,35758750-35759022,
           35759112-35759251,35759330-35759471
          Length = 358

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 26/82 (31%), Positives = 40/82 (48%)
 Frame = +3

Query: 72  KRTRKLTQTAKATKEQDSGSEKDSDFDSDGNYVGEKXLQADFEGRNPEDSDFHGIKQLLR 251
           KR    +   + + + +S S  DSD DSD        +QADF   +P+  DFHG+K LL+
Sbjct: 63  KRAEPSSDEERYSSDDESYSS-DSD-DSDDASEELDTVQADFAFYDPKPGDFHGVKLLLK 120

Query: 252 QCF*NQMLTLEG*PKLLYHKIT 317
               ++   L G   L+  + T
Sbjct: 121 TYLDSKPWDLTGFVDLILEQTT 142


>04_04_0877 + 29018168-29018279,29019013-29019230,29019333-29019713
          Length = 236

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 84  KLTQTAKATKEQDSGSEKDSDFDSDGN 164
           K+ +  K+ KE+D G   D D+DS+GN
Sbjct: 86  KVLRLLKSLKERDGGVYLDEDYDSEGN 112


>01_01_0231 + 1951047-1951499
          Length = 150

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 426 KEKMNPVWHRSENCLQNYLRRMQIPE-PKIN*IYSG 530
           KE  N  WHR E     ++RR ++PE  K++ + +G
Sbjct: 88  KEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAG 123


>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
          Length = 438

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 426 KEKMNPVWHRSENCLQNYLRRMQIPE-PKIN*IYSG 530
           KE  N  WHR E     ++RR ++PE  K++ + +G
Sbjct: 88  KEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAG 123


>01_01_0229 - 1943473-1943922
          Length = 149

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 426 KEKMNPVWHRSENCLQNYLRRMQIPE 503
           KE  N  WHR E     ++RR ++PE
Sbjct: 87  KEDKNDKWHRVERSSGQFMRRFRLPE 112


>05_04_0148 -
           18426903-18427106,18430516-18430594,18430752-18430935,
           18431020-18431063,18432028-18432165,18432713-18434511
          Length = 815

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 495 SAFS*DSFVSNSLICATLGSFFL 427
           SA S D  + NSLIC +LG FFL
Sbjct: 535 SAVSPDFVLGNSLICMSLGVFFL 557


>01_06_1193 -
           35306608-35306777,35306869-35306890,35306988-35306996,
           35307107-35307115,35307470-35307491,35307981-35308784,
           35308861-35309088,35309250-35309335,35309449-35309530,
           35309630-35309778,35309992-35310105,35310961-35311059,
           35311243-35311321,35311873-35312021
          Length = 673

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = +1

Query: 487 ECRSQNQKLIKYILADDSQH---TGLVINERILNI 582
           +CRS  QKL++++ +  ++     GL IN+R+ NI
Sbjct: 237 QCRSNQQKLMQFVSSTGNEQLLKQGLEINDRLQNI 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,112,597
Number of Sequences: 37544
Number of extensions: 224946
Number of successful extensions: 697
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)