Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0036
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   2.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.1  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 609 NNGYANRCRNV*YSFIN 559
           NN Y N C+ + Y+ IN
Sbjct: 344 NNNYNNNCKKLYYNIIN 360


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 63  CLIKRTRKLTQTAKATKE-QDSG-SEKDSDFDSDGNYVGEKXLQAD 194
           C +   + L  T    ++  D G + +DSD  SDGN   E   +AD
Sbjct: 168 CSLDNLQTLNLTENRLRDINDIGLNRRDSDDGSDGNDGDESSCRAD 213


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 123 SGSEKDSDFDSDGNYVGE 176
           SGS  DSD  +D  +VG+
Sbjct: 20  SGSSSDSDGQTDEGFVGD 37


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = -1

Query: 539 ESSARIYLINFWFWDLHSPEIVL*AIL*SVPHWVHF 432
           E    +   +++F+D  +    L +I+ ++P W+ F
Sbjct: 19  EGMTNVLDFDYYFYDYSNRTQALESIIANIPTWLSF 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,176
Number of Sequences: 438
Number of extensions: 2450
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)