Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0036
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44510.1 68415.m05534 p21Cip1-binding protein-related similar...    35   0.056
At5g19410.1 68418.m02313 ABC transporter family protein white me...    29   2.1  
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote...    29   2.8  
At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein (HS...    29   3.7  
At4g26600.1 68417.m03834 nucleolar protein, putative similar to ...    28   4.9  
At3g47730.1 68416.m05200 ABC transporter family protein AbcA, Di...    28   4.9  
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ...    28   6.5  
At5g16190.1 68418.m01892 glycosyl transferase family 2 protein s...    27   8.5  

>At2g44510.1 68415.m05534 p21Cip1-binding protein-related similar to
           p21Cip1-binding protein TOK-1beta (GI:7339688) [Homo
           sapiens]; similar to BRCA2 and Cip1/p21 interacting
           protein (GI:25989375) [Homo sapiens]
          Length = 326

 Score = 34.7 bits (76), Expect = 0.056
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 150 DSDGNYVGEKXLQADFEGRNPEDSDFHGIKQLLR 251
           DS      ++ +QADFE  +P+ +DFHG+K LL+
Sbjct: 71  DSSDEEDSQEDVQADFEFFDPKPTDFHGVKILLQ 104


>At5g19410.1 68418.m02313 ABC transporter family protein white
           membrane transporter, Bactrocera tryoni, EMBL:U97104
          Length = 624

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -3

Query: 495 SAFS*DSFVSNSLICATLGSFFL 427
           SA S D    NSLIC  LG+FFL
Sbjct: 502 SAVSPDFISGNSLICTVLGAFFL 524


>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
           (HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
           crystallin family; identified in Scharf, K-D., et al,
           Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 153

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 426 KEKMNPVWHRSENCLQNYLRRMQIPE 503
           KE  N  WHR E     + RR ++PE
Sbjct: 91  KEDKNDTWHRVERSSGQFTRRFRLPE 116


>At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein
           (HSP18.1-CI) identical to 18.2 kDa class I heat shock
           protein (HSP 18.2) (SP:P19037)[Arabidopsis thaliana];
           contains Pfam profile: PF00011 Hsp20/alpha crystallin
           family
          Length = 161

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 429 EKMNPVWHRSENCLQNYLRRMQIPE 503
           E+ N  WHR E     ++RR ++PE
Sbjct: 98  EEKNDKWHRVERASGKFMRRFRLPE 122


>At4g26600.1 68417.m03834 nucleolar protein, putative similar to
           SP|P46087 Proliferating-cell nucleolar antigen p120
           (Proliferation-associated nucleolar protein p120) {Homo
           sapiens}; contains Pfam profile PF01189: NOL1/NOP2/sun
           family
          Length = 671

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 111 KEQDSGSEKDSDFDSDGNYVGEKXLQADFEGRNPEDSD 224
           ++ D GSE  SD  SDG+  G      D +  + +D D
Sbjct: 69  EQSDEGSESGSDLFSDGDEEGNNDSDDDDDDDDDDDDD 106


>At3g47730.1 68416.m05200 ABC transporter family protein AbcA,
           Dictyostelium discoideum, DDU66526
          Length = 983

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 510 FLVLGSAFS*DSFVSNSLICATLGSFFLLVIFTT 409
           F ++G AF   +F+S S    T+G F  LV F T
Sbjct: 317 FNLIGLAFMLSAFISKSTSATTVGFFVFLVGFVT 350


>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1218

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 168 VGEKXLQADFEGRNPEDSDFHGIKQLLR 251
           V EK   A F+GRN  ++D  G+K  L+
Sbjct: 746 VDEKYSNAFFDGRNLTEADMEGLKHALK 773


>At5g16190.1 68418.m01892 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535
          Length = 504

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 60  KCLIKRTRKLTQTAKATKEQDSGSEKDSDFDSDG 161
           KCL+ R ++++     T EQ+SGS + + F  +G
Sbjct: 209 KCLMTRMQEMSLNYHFTAEQESGSTRHAFFGFNG 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,064,396
Number of Sequences: 28952
Number of extensions: 195527
Number of successful extensions: 705
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)