Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0034
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 58 2e-09
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 50 2e-07
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 48 2e-06
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 48 2e-06
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 46 5e-06
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 45 1e-05
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 44 2e-05
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 44 3e-05
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 43 5e-05
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 41 2e-04
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 40 3e-04
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 31 0.16
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 29 0.85
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 27 2.0
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 26 4.5
SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.9
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 57.6 bits (133), Expect = 2e-09
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Frame = +2
Query: 461 TSSRVKKTSKNSH*Q*PYVCEV--CDKKFVLKWHLKVHQRTHTGERPYVCEVCDKKFVAK 634
+SS+ K SK+ Q YVC C+K+F ++LK H THT RP+ C +C K F +
Sbjct: 556 SSSKAKSESKS---QGNYVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQ 612
Query: 635 NVTSRYIQSTHTG*KTFMVV 694
+ R+ + HTG K F V
Sbjct: 613 HDKRRH-EQLHTGIKAFACV 631
Score = 43.6 bits (98), Expect = 3e-05
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +2
Query: 509 PYVCEVCDKKFVLKWHLKVHQRTHTGERPYVCEVCDKKFVAKNVTSRYIQS 661
P+ C +C K F + + H++ HTG + + C C+++F + +R+ +S
Sbjct: 599 PFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRHYKS 649
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +3
Query: 348 YVCEV--CQKGFTQMFYLKKHLRIISE-KLHNCEVCDKSFAQAVELKRHLRTHT 500
YVC C K FT+ + LK H+ + + C +C KSFA+ + +RH + HT
Sbjct: 570 YVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHT 623
Score = 39.9 bits (89), Expect = 3e-04
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 315 SFKTRHNVMKPYVCEVCQKGFTQMFYLKKHLRI-ISEKLHNCEVCDKSFAQAVELKRHLR 491
S H +P+ C +C+K F + ++H ++ K C C++ FA+ L RH +
Sbjct: 589 SHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRHYK 648
Query: 492 THTDNNLM 515
+ N +
Sbjct: 649 SEVGQNCL 656
Score = 29.1 bits (62), Expect = 0.64
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 444 CDKSFAQAVELKRHLRTHTDNNLMCVKYVIKSLC-*NGTSRYIKEHILVKDLMCV 605
C+K F +A LK H+ THT+ KS + R+ + H +K CV
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACV 631
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 50.4 bits (115), Expect = 2e-07
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +2
Query: 461 TSSRVKKTSKNSH*Q*PYVCEVCDKKFVLKWHLKVHQRTHTGERPYVCEV--CDKKFVAK 634
T+ + +++KN PY C +C K F H H RTHTGE+P+VC C K+F
Sbjct: 9 TTGKPSRSTKNPDAPRPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRS 68
Query: 635 NVTSRYIQSTHT 670
+ +R+ + HT
Sbjct: 69 DELTRHAR-IHT 79
Score = 47.6 bits (108), Expect = 2e-06
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +3
Query: 342 KPYVCEVCQKGFTQMFYLKKHLRI-ISEKLHNCEV--CDKSFAQAVELKRHLRTHTDNN 509
+PY C +C K F ++ + +H+R EK H C C K F+++ EL RH R HT+ N
Sbjct: 24 RPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHTNAN 82
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 47.6 bits (108), Expect = 2e-06
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Frame = +2
Query: 509 PYVCEV--CDKKFVLKWHLKVHQRTHTGERPYVC--EVCDKKFVAKNVTSRYIQ 658
P+VC+ C K F K HLK+H+R HT +P+ C + CD +F + R+I+
Sbjct: 52 PFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIE 105
Score = 39.5 bits (88), Expect = 5e-04
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 509 PYVCEVCDKKFVLKWHLKVHQRTHTGERPYVCEV--CDKKFVAKNVTSRYIQSTHTG*KT 682
PY E C KK+ L+ H RTH+ ERP+VC+ C K F K+ + + HT K
Sbjct: 26 PY--EECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIH-KRCHTNVKP 82
Query: 683 F 685
F
Sbjct: 83 F 83
Score = 38.7 bits (86), Expect = 8e-04
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +3
Query: 342 KPYVC--EVCQKGFTQMFYLKKHLRIISE--KLHNCEVCDKSFAQAVELKRHLRTHT 500
K Y C E C+K FT+ LKKH+ +I E +C+ C F L+RHL T
Sbjct: 234 KTYHCPMEGCKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHMLQRHLERGT 290
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +2
Query: 509 PYVCEV--CDKKFVLKWHLKVHQRTHTGERPYVC--EVCDKKFVAKNVTSRYIQSTHT 670
P+ C CD +F + HL+ H H +PY C E CD+ F +I + HT
Sbjct: 82 PFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHISACHT 139
Score = 35.1 bits (77), Expect = 0.010
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +3
Query: 330 HNVMKPYVCEV--CQKGFTQMFYLKKHLRIISE-KLHNCEV--CDKSFAQAVELKRHLRT 494
H+ +P+VC+ C K F + +LK H R + K +C CD F L+RH+
Sbjct: 47 HSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEV 106
Query: 495 H 497
H
Sbjct: 107 H 107
Score = 33.5 bits (73), Expect = 0.030
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = +2
Query: 518 CEVCDKKFV----LKWHLKVHQRTHTGERPYVC--EVCDKKFVAKNVTSRYIQSTHTG*K 679
C +C ++F L+ H+ +HQ T + Y C E C K F + ++I H G
Sbjct: 206 CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNM 265
Query: 680 TF 685
F
Sbjct: 266 AF 267
Score = 32.3 bits (70), Expect = 0.069
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +3
Query: 345 PYVCEVCQKGFTQMFYLKKHLRIIS-EKLHNCEV--CDKSFAQAVELKRHLRTHTD 503
PY E C K +++ L++HLR S E+ C+ C K+F + LK H R HT+
Sbjct: 26 PY--EECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTN 79
Score = 31.1 bits (67), Expect = 0.16
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Frame = +3
Query: 354 CEVCQKGFTQMFYLKKHL-----RIISEKLHNC--EVCDKSFAQAVELKRHLRTHTDNNL 512
C +C + F +L+ H+ + K ++C E C KSF ++ LK+H+ + N+
Sbjct: 206 CSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNM 265
Score = 28.7 bits (61), Expect = 0.85
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +3
Query: 399 KHLRIISEKLHNC--EVCDKSFAQAVELKRHLRTHTDNNLMCVKY 527
K+LR ++K+ +C E C K +++ L++HLRTH++ Y
Sbjct: 14 KNLRS-AKKIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDY 57
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 47.6 bits (108), Expect = 2e-06
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 527 CDKKFVLKWHLKVHQRTHTGERPYVCEVCDKKFVAKNVTSRYIQSTH 667
C K F K HL+ H+RTH + + C C++ F +V +R++Q H
Sbjct: 33 CPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMH 79
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 363 CQKGFTQMFYLKKHLRIISE-KLHNCEVCDKSFAQAVELKRHL-RTHTDNNLMCVKYVIK 536
C K FT+ +L++H R K +C C+++FA++ L RH+ + H + + ++
Sbjct: 33 CPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQNLSERRMLN 92
Query: 537 SLC 545
+ C
Sbjct: 93 ASC 95
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 46.0 bits (104), Expect = 5e-06
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Frame = +2
Query: 512 YVCEVCDKKFVLKWHLKVHQRTHTGERPYVC-EV------CDKKFVAKNVTSRYIQSTH 667
YVCE C + F HLK H R+HT E+P+ C E+ C ++F +++ R+ Q H
Sbjct: 70 YVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEIDGLPTGCGRQFSRRDLLLRHQQKIH 128
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 339 MKPYVCEVCQKGFTQMFYLKKHLRI-ISEKLHNCEVCD 449
+K YVCE C + F ++ +LK+H+R +EK C D
Sbjct: 67 VKQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEID 104
Score = 35.9 bits (79), Expect = 0.006
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 423 KLHNCEVCDKSFAQAVELKRHLRTHTD 503
K + CE C ++FA+ LKRH+R+HT+
Sbjct: 68 KQYVCETCTRAFARLEHLKRHIRSHTN 94
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 590 RPYVCEVCDKKFVAKNVTSRYIQSTHTG*KTF 685
+ YVCE C + F R+I+S HT K F
Sbjct: 68 KQYVCETCTRAFARLEHLKRHIRS-HTNEKPF 98
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = +2
Query: 509 PYVCEVCDKKFVLKWHLKVHQRTHTGERPYVCEVCDKKFVAKNVTSRYIQ 658
PY C++C FV LK H R H RPYVCE C K+F + +R+ Q
Sbjct: 472 PYRCDLCKAGFVRHHDLKRHLRIHENGRPYVCE-CLKRFNRLDALNRHKQ 520
Score = 43.2 bits (97), Expect = 4e-05
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 512 YVC--EVCDKKFVLKWHLKVHQRTHTGERPYVCEVCDKKFVAKNVTSRYIQSTHTG 673
YVC C+K+ K++++ H +TH +RPY C++C FV + R+++ G
Sbjct: 443 YVCLYNGCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHENG 498
Score = 39.5 bits (88), Expect = 5e-04
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +3
Query: 348 YVC--EVCQKGFTQMFYLKKHLRI-ISEKLHNCEVCDKSFAQAVELKRHLRTH 497
YVC C K + + ++ H++ +S++ + C++C F + +LKRHLR H
Sbjct: 443 YVCLYNGCNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIH 495
Score = 38.7 bits (86), Expect = 8e-04
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 342 KPYVCEVCQKGFTQMFYLKKHLRIISE-KLHNCEVCDKSFAQAVELKRH 485
+PY C++C+ GF + LK+HLRI + + CE C K F + L RH
Sbjct: 471 RPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVCE-CLKRFNRLDALNRH 518
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 44.0 bits (99), Expect = 2e-05
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 512 YVCEV--CDKKFVLKWHLKVHQRTHTGERPYVCEVCDKKFVAKNVTSRYIQSTH 667
Y C+ C K F K H + H R+HT + ++C C F +V +R++ H
Sbjct: 17 YKCDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKH 70
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 444 CDKSFAQAVELKRHLRTHTDN 506
C KSF + +RH R+HT++
Sbjct: 24 CTKSFTRKEHARRHFRSHTNS 44
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 43.6 bits (98), Expect = 3e-05
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +2
Query: 512 YVCEVCDKKFVLKWHLKVHQRT-HTGERPYVCEVCDKKF 625
+VC C KKF HL+ H R+ HT E+P+VC +C K+F
Sbjct: 423 FVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRF 460
Score = 41.1 bits (92), Expect = 1e-04
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +3
Query: 342 KPYVCEVCQKGFTQMFYLKKHLRII--SEKLHNCEVCDKSFAQAVELKRHLRTHTD 503
K +VC C K F + +L++H+R + SEK C +C K F++ L++H R H +
Sbjct: 421 KSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQHERLHVN 475
Score = 33.1 bits (72), Expect = 0.039
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 584 GERPYVCEVCDKKFVAKNVTSRYIQSTHTG*KTFMVV 694
G + +VC C KKF R+I+S HT K F+ +
Sbjct: 419 GGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVCI 455
Score = 29.1 bits (62), Expect = 0.64
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 509 PYVCEVCDKKFVLKWHLKVHQRTHTGERP 595
P+VC +C K+F + +L+ H+R H P
Sbjct: 451 PFVC-ICGKRFSRRDNLRQHERLHVNASP 478
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 42.7 bits (96), Expect = 5e-05
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 7/59 (11%)
Frame = +2
Query: 512 YVCEV--CDKKFVL---KWHLKVHQRTHTGERPYVCEV--CDKKFVAKNVTSRYIQSTH 667
Y CE C +K ++ ++ L H R+HTGE+P++C V CD+ F + ++++++ H
Sbjct: 73 YTCEWDDCPRKGMVQTSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRTVH 131
Score = 31.1 bits (67), Expect = 0.16
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Frame = +3
Query: 348 YVCEV--C-QKGFTQM--FYLKKHLRI-ISEKLHNCEV--CDKSFAQAVELKRHLRT 494
Y CE C +KG Q F L HLR EK C V CD+SF ++ L +H+RT
Sbjct: 73 YTCEWDDCPRKGMVQTSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRT 129
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 330 HNVMKPYVCEV--CQKGFTQMFYLKKHLRIISE 422
H KP++C V C + FT+ L KH+R + E
Sbjct: 100 HTGEKPFICSVPECDRSFTRSDALAKHMRTVHE 132
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 512 YVCEVCDKKFVLKWHLKVHQRTHTGERPYVCEV--CDKKFVAKNVTSRYIQSTH 667
Y C C + F + H H R+HTGE+P+ C C K+F ++ R+++ TH
Sbjct: 4 YECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVR-TH 56
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +3
Query: 339 MKPYVCEVCQKGFTQMFYLKKHLRI-ISEKLHNCEV--CDKSFAQAVELKRHLRTH 497
MK Y C C++ F + + +H+R EK C C K F + EL RH+RTH
Sbjct: 1 MKSYECPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTH 56
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 39.9 bits (89), Expect = 3e-04
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 512 YVCEVCDKKFVLKWHLKVHQRTHTGERPYVCEV--CDKKFVAKNVTSRY 652
Y C C + F LK+H +HTGERP+VC+ C K F ++ R+
Sbjct: 468 YRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRH 516
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +2
Query: 509 PYVCEV--CDKKFVLKWHLKVHQRTH 580
P+VC+ C K F ++ +++ HQR H
Sbjct: 495 PFVCDYAGCGKAFNVRSNMRRHQRIH 520
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 31.1 bits (67), Expect = 0.16
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 342 KPYVCEVCQKGFTQMFYLKKHLRIISEK--LHNCEVCDKSFA 461
+P+V CQ F + L+K ++ SEK L C++C S+A
Sbjct: 847 EPFVLFPCQHAFHRSCMLEKTYKLASEKNILKECQLCGPSYA 888
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 28.7 bits (61), Expect = 0.85
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 566 HQRTHTGERPYVCEVCDKKFVAKNVTSRYIQSTHT 670
HQ +PY CEVC K++ KN+ TH+
Sbjct: 389 HQGFVVENKPYRCEVCSKRY--KNLNGLKYHRTHS 421
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 411 IISEKLHNCEVCDKSFAQAVELKRHLRTHT 500
++ K + CEVC K + LK H RTH+
Sbjct: 393 VVENKPYRCEVCSKRYKNLNGLKYH-RTHS 421
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 342 KPYVCEVCQKGFTQMFYLKKH 404
KPY CEVC K + + LK H
Sbjct: 397 KPYRCEVCSKRYKNLNGLKYH 417
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 509 PYVCEVCDKKFVLKWHLKVHQRTHT 583
PY CEVC K++ LK H RTH+
Sbjct: 398 PYRCEVCSKRYKNLNGLKYH-RTHS 421
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +3
Query: 552 GTSRYIKEHILVKDLMCVKY--VIKSLWLKMSPQGTSKVHILVE 677
G +Y + + VK+ +K L L P GT K H LVE
Sbjct: 201 GDIKYFNKELNASQKKAVKFSIAVKELSLIHGPPGTGKTHTLVE 244
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +3
Query: 417 SEKLHNCEVCDKSFAQAVELKRHL--RTHTDN 506
+E NCEVC+K F H+ + H DN
Sbjct: 66 AEFYQNCEVCNKKFYSEGAYSSHMASKKHRDN 97
>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 100
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 289 CQKRFTCISHLKHDTM**NLMFVKCAKKVLRK 384
CQ RF S+LKH+ + N++F C + LR+
Sbjct: 57 CQ-RFLFSSNLKHNYVNLNIIFTSCIFRSLRE 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,885
Number of Sequences: 5004
Number of extensions: 60016
Number of successful extensions: 202
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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