Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0033
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    31   0.21 
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    27   2.6  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    27   3.4  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.4  
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy...    26   4.5  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   4.5  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   4.5  
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    25   7.8  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = +1

Query: 406 RWLHEAYGLGRFGYAQP-----ERFHYSISGRQER 495
           R++HEA+G+  FG + P     E+FH++ SG  +R
Sbjct: 629 RYVHEAFGMHTFGDSGPAPKLYEKFHFTTSGVAQR 663


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 416 MKHTDLEDSVMRNLNASITQYPVDKN 493
           +K   +EDS + N+ AS+  + VDKN
Sbjct: 416 VKVETVEDSFLSNIGASLLSFTVDKN 441


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 513 DIIVFWTFLSTGY*VMEAFRLRITESSKSVCF 418
           D+ +F T +S  Y      RL + +S KSVCF
Sbjct: 295 DVFLFPTGMSAIYNTHRILRLVLDDSRKSVCF 326


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 21/100 (21%), Positives = 39/100 (39%)
 Frame = -1

Query: 546 VYTAALQVCLYDIIVFWTFLSTGY*VMEAFRLRITESSKSVCFM*PAMPTASSATNMIKR 367
           +YT  L++   D++VF+TF+   +      +  +T  + S   +    P  +   N I  
Sbjct: 265 LYTGILKILKDDLLVFYTFIPPRF----TIQTSVTLINASFATLVSLYPEENENLNSIML 320

Query: 366 NTENVIIMQWFSLTAPQQPKNATMKTIMPTMMRTIGATCR 247
           N  N +    F      Q   + +  +   M  T+   CR
Sbjct: 321 NGINSVFQFAFDYPLILQAAFSQIMVLTDKMNLTLDELCR 360


>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +1

Query: 496 PEDYYIIQTDLQCCGINSP--ADWAD-HGLPIPSTCCSAQEINDGVVAACTENSTNFHSK 666
           PE+++I+Q  L+ C I SP   D A+  G+ I  +   A+E     V+A  E      S+
Sbjct: 170 PENWHILQKALKYCDIFSPNEVDSANLLGIDISESKSRAKEF----VSAFQEFQIGHDSQ 225

Query: 667 GW 672
           GW
Sbjct: 226 GW 227


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 324 APQQPKNATMKTIMPTMMRTIGAT 253
           AP QPK +   +I+PT+ RT   T
Sbjct: 810 APVQPKTSQASSILPTVPRTTSYT 833


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 469  NGSVQVAHNRIFQVRMLHVTSDAHSQFSHEYDQEE 365
            +GS+ + H++ FQ    H T  +  +   EY   E
Sbjct: 1111 SGSISLKHSKSFQSASTHSTKSSSVEIVREYSSRE 1145


>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 582 YGQTVIGPVGRTVYTAALQVCLYDIIV 502
           +G+T +GP+   +   AL+ C  D++V
Sbjct: 383 FGKT-LGPIANAINACALRTCKADVVV 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,018
Number of Sequences: 5004
Number of extensions: 55509
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)