Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0032
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    48   9e-07
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    27   1.4  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    26   2.5  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    25   4.4  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   7.6  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    25   7.6  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    25   7.6  

>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 47.6 bits (108), Expect = 9e-07
 Identities = 25/52 (48%), Positives = 33/52 (63%)
 Frame = +2

Query: 296 LARHGRKHQLQPSDVNYRANIWALKQVGCTHILATTATGSLVEEYRPGDLVI 451
           LARHG  H   P++V  RANI ALK +G   I++ +A GSL E+  P D V+
Sbjct: 57  LARHGVGHIYTPTEVPSRANIAALKSLGVLAIVSFSAVGSLREDIPPEDFVL 108


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 413 SLVEEYRPGDLVILDDF 463
           ++V  YRPGDL+++ D+
Sbjct: 210 NIVSNYRPGDLILIHDY 226


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +3

Query: 315 NINFNLAM*TIELIFGHLSKSAALTSSPRPPLGL*LKNTGLGIWSYWTISL 467
           N++F +++   +L+F    +    T      +    KN  + IW+YW ++L
Sbjct: 550 NVDFEVSVLASQLVFFVKHRDFKRTLITMKAISKLQKNFDVRIWNYWLVAL 600


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 158 DRNYRRFGLR*SDAFRESNRKGGGHTVWXTLGLLI 262
           ++    FG+   + F  S+  GG ++VW  +GL +
Sbjct: 255 EKEVTAFGISAQNMFEFSDWVGGRYSVWSAIGLSV 289


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 332 SDVNYRANIWALKQVGCTHILATTATGSLVEEYRPGDLVILDDF 463
           S+V+     W    V   H  A      + E Y+PGD +I+ D+
Sbjct: 180 SEVDENEEQWWRDYVKMNHAFAD----KICEIYKPGDFIIVQDY 219


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 245 TLGLLIEGQIKRVQCVLLARHGRKHQLQPSDVNYRANIWALKQVGCTHIL 394
           TL   + G    + CV   R G ++ +  S  +    IW  K   C HIL
Sbjct: 260 TLLFTLSGHTAPITCV---RWGGQNWIYSSSYDKTIRIWDAKDGKCLHIL 306


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -3

Query: 369 LSAQILAR*FTSLG*S*CFLPCRASRTHWT 280
           LSA ILA    SLG   CFLP ++S T +T
Sbjct: 110 LSAMILAL-ILSLGEMCCFLPNQSSITMYT 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,849,382
Number of Sequences: 5004
Number of extensions: 33988
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)