Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0032
         (467 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1875| Best HMM Match : No HMM Matches (HMM E-Value=.)               89   2e-18
SB_1950| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  

>SB_1875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 36/56 (64%), Positives = 44/56 (78%)
 Frame = +2

Query: 299 ARHGRKHQLQPSDVNYRANIWALKQVGCTHILATTATGSLVEEYRPGDLVILDDFI 466
           A HGRKH + P+D+NYRAN+WALK+ GCTHI+ TTA GSL E YRPG++V  D  I
Sbjct: 218 AGHGRKHTVMPTDINYRANVWALKEEGCTHIVVTTACGSLTEAYRPGEIVFPDQII 273


>SB_1950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 420

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 350 ANIWALKQVGCTHILATTATGSL 418
           A +W +K+  CTH+L T  T S+
Sbjct: 186 ARVWDIKEARCTHVLDTPHTDSV 208


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,846,246
Number of Sequences: 59808
Number of extensions: 255625
Number of successful extensions: 491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)