Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0032
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23168-10|AAC38810.2|  288|Caenorhabditis elegans Hypothetical p...    82   2e-16
AF026213-9|AAB71302.2|  615|Caenorhabditis elegans Protein kinas...    27   8.9  

>U23168-10|AAC38810.2|  288|Caenorhabditis elegans Hypothetical
           protein B0228.7 protein.
          Length = 288

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 37/67 (55%), Positives = 47/67 (70%)
 Frame = +2

Query: 257 LIEGQIKRVQCVLLARHGRKHQLQPSDVNYRANIWALKQVGCTHILATTATGSLVEEYRP 436
           ++EG I  V+CVLLARHGRKH + P +VN+RAN+WAL   G   I+A+TA GSL E   P
Sbjct: 37  VVEGTINGVECVLLARHGRKHDIMPGNVNFRANLWALYSRGVDVIIASTACGSLQENVEP 96

Query: 437 GDLVILD 457
           G L+  D
Sbjct: 97  GHLLFPD 103



 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 177 SGFDDPTLFENQIEKEVVTPFGXPSD 254
           SG +DP +  + +   V TP+G PSD
Sbjct: 10  SGLEDPNILLDPVTVAVDTPYGKPSD 35


>AF026213-9|AAB71302.2|  615|Caenorhabditis elegans Protein kinase
           protein 9, isoform b protein.
          Length = 615

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 311 RKHQLQPSDVNYRANIWALKQVGCTHILATTATGSLVE 424
           + H L PSD+ Y   I  L Q    ++ +T  T + VE
Sbjct: 71  QNHNLSPSDIRYLETITNLSQQALNNVKSTIDTINEVE 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,257,501
Number of Sequences: 27780
Number of extensions: 193064
Number of successful extensions: 299
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)