Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0032
         (467 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27400.1 68418.m03271 expressed protein hypothetical proteins...    27   6.3  
At3g62750.1 68416.m07049 glycosyl hydrolase family 1 protein con...    27   6.3  
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai...    27   6.3  

>At5g27400.1 68418.m03271 expressed protein hypothetical proteins -
           different species
          Length = 369

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 371 QVGCTHILATTATGSLVEEYRPGDLVILDDFI 466
           +V CTH+   TA+ S + +YRP D+V+  D I
Sbjct: 235 RVKCTHLPWETASESELSQYRP-DIVLGADVI 265


>At3g62750.1 68416.m07049 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; similar to hydroxyisourate hydrolase
           (GI:19569603) [Glycine max]
          Length = 486

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 134 IDGTIQHYTHRYKNFPISV 78
           ++G +QH  HRY N PI +
Sbjct: 365 LEGVLQHIKHRYNNPPIYI 383


>At3g19670.1 68416.m02492 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
           GI:3341980; contains Pfam profiles PF01846: FF domain,
           PF00397: WW domain
          Length = 960

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 128 RRYGRCKKNKDRNYRRFGLR*SDA--FRESNRKGGGH 232
           RR GR   N+ R  R   ++ +D   F+ES++ GGGH
Sbjct: 881 RRSGRDSHNRHRE-RHTSVKENDTDHFKESHKAGGGH 916


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,643,764
Number of Sequences: 28952
Number of extensions: 179398
Number of successful extensions: 403
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)