Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0031
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy...    59   7e-10
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar...    56   6e-09
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    33   0.037
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    25   9.8  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     25   9.8  

>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 256

 Score = 59.3 bits (137), Expect = 7e-10
 Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 9/174 (5%)
 Frame = +3

Query: 291 DNYMYLIVDKATKEAAIVDPVEPKTVLKAVEE----QGVNLXXXXXXXXXXXXAGGNEDL 458
           +NY YL+    TK  AIVDP EP++V+  ++E    + ++L            AGGNED+
Sbjct: 16  NNYAYLLTCDKTKITAIVDPAEPESVIPVIKEKTAKKEIDLQYILTTHHHYDHAGGNEDI 75

Query: 459 IKERPGLIVYGGDDRIG----PSQKKLSTIQSLKSVT*MYSVFLHPVIQLGIYVIS*LLQ 626
           +   P L VYGG +  G    P  K++  +  ++ V  +++   H    +  YV S    
Sbjct: 76  LSYFPSLKVYGGKNASGVTYTPKDKEIFKVGEVQ-VEALHTP-CHTQDSICYYVSS--PS 131

Query: 627 KKVTIQLSSPGDTLFLGGCGQVL-*RARQIKCTKH*QF*AAA*PH*MFCGHEYT 785
           K+        GDTLF  GCG+     A+Q+    +    A       + GHEYT
Sbjct: 132 KRAVF----TGDTLFTSGCGRFFEGDAKQMDYALNHVLAALPDDTVTYPGHEYT 181



 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 30/78 (38%), Positives = 41/78 (52%)
 Frame = +2

Query: 542 FKIGNLNVQCLFTPCHTTGHICYFVTAPEEGNDSVVFTGGYTLLRRMWAGSLKGTADQMY 721
           FK+G + V+ L TPCHT   ICY+V++P +     VFTG  TL         +G A QM 
Sbjct: 103 FKVGEVQVEALHTPCHTQDSICYYVSSPSK---RAVFTGD-TLFTSGCGRFFEGDAKQMD 158

Query: 722 KALTILSSCLTTLNVLWP 775
            AL  + + L    V +P
Sbjct: 159 YALNHVLAALPDDTVTYP 176


>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 256

 Score = 56.0 bits (129), Expect = 6e-09
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
 Frame = +3

Query: 288 QDNYMYLIVDKATKEAAIVDPVEPKTVL----KAVEEQGVNLXXXXXXXXXXXXAGGNED 455
           QDNY YL++ + T++AAIVDP E   V+    K ++ + ++L            +GGN +
Sbjct: 15  QDNYAYLLLCEETRQAAIVDPAEVNVVMPILKKKLKNKEIDLQAILTTHHHADHSGGNLN 74

Query: 456 LIKERPGLIVYGGDDRIGPS 515
           L KE P + +YGG D+ G S
Sbjct: 75  LKKEFPHVTIYGGSDQNGVS 94



 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 28/77 (36%), Positives = 41/77 (53%)
 Frame = +2

Query: 545 KIGNLNVQCLFTPCHTTGHICYFVTAPEEGNDSVVFTGGYTLLRRMWAGSLKGTADQMYK 724
           +IGN+ ++ L TPCHT   IC++       N+  VFTG  TL         +GTA +M+ 
Sbjct: 104 RIGNVQIEALHTPCHTRDSICFYA---HSSNEHAVFTGD-TLFNAGCGRFFEGTAAEMHI 159

Query: 725 ALTILSSCLTTLNVLWP 775
           AL  + S L    V++P
Sbjct: 160 ALNAVLSSLPNNTVIYP 176


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 33.5 bits (73), Expect = 0.037
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = -3

Query: 819 YVSRQIXKFLPKCTHGHKTFSVVRQLLRIVNALYI*SAVPFKEPAHIRLRRVYPPVKTTE 640
           ++ R I     +  + ++ F+ + +LL I+ ++    A+P KE   I L RV  P+   +
Sbjct: 278 FIRRSINNLFLQFVYENEQFNGIAELLEILGSIINGFALPLKEEHKIFLSRVLIPLHKAK 337

Query: 639 SLP 631
           SLP
Sbjct: 338 SLP 340


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 104 FIDDVFVGHYKISSGV*SQITDFLLFIYTNYNQ 6
           F D +  GHY   S +   +  F  FI  NYNQ
Sbjct: 305 FFDILLKGHYLNFSLILGSLLVFAGFIVVNYNQ 337


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 112 LFKKTYSMLARFVNSLPSGLSQRITKLYFRALIRNQREAHSSQEDHQ 252
           LFKKTY+++A  V+    GL  ++ K   + L+   R  H  Q++++
Sbjct: 33  LFKKTYNLVAAKVSPKKVGLLNKVCK---KDLLDWPRVKHVYQQNNE 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,540
Number of Sequences: 5004
Number of extensions: 62094
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)