Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0030
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1197 - 11372764-11373174                                         30   1.1  
03_05_0637 - 26312348-26313004,26313507-26313575,26313799-26314071     29   2.0  
10_03_0007 - 6956215-6956223,6957082-6957300,6957874-6957978,695...    28   4.5  

>07_01_1197 - 11372764-11373174
          Length = 136

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 347 SKHVLDSTSNCQCCRRETKVSKIVCDSLYFSL 252
           +K VL  T++ QCC R +   K++C  L FSL
Sbjct: 105 AKDVL-RTNDLQCCSRPSSPGKLICKKLGFSL 135


>03_05_0637 - 26312348-26313004,26313507-26313575,26313799-26314071
          Length = 332

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = +2

Query: 212 MPWCLRVRRTRRAKGKSRDYHRQSWKL--WFLSGNIDSSK---LNRVH 340
           M WC R+R       K   Y R  W+L  +FL  + D+ +   L R+H
Sbjct: 22  MRWCWRMRMRHHGTWKKWIYQRLGWELLPFFLCNHCDTDRQALLRRIH 69


>10_03_0007 -
           6956215-6956223,6957082-6957300,6957874-6957978,
           6958062-6958175,6958342-6958467,6958583-6958697,
           6958791-6958867,6958956-6959179,6959848-6959953,
           6960065-6960163,6960282-6960467,6960611-6960613
          Length = 460

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 39  SQFTLFKLSEPN*NKENVANTVYSKYFHSLRYK 137
           + ++LFKL+  N   + +   V   YFH L Y+
Sbjct: 116 ANYSLFKLARTNNRGDGLLTAVNKNYFHVLNYR 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,638,972
Number of Sequences: 37544
Number of extensions: 190931
Number of successful extensions: 312
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)