Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0030
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   3.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   6.5  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   8.6  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   8.6  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   8.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   8.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   8.6  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   8.6  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   8.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   8.6  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   8.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.6  

>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 207 IECRGAYVLEGLVGLKGKVETITDNLGNFGFSPAT 311
           IEC G  +       +G++  I    G FG +P T
Sbjct: 39  IECVGDDIAWMKFDKEGRLRAINPEYGFFGVAPGT 73


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 343  NMYSIQLRTVNVAGEKPKFPRLSV 272
            N Y + L + N  G  P  P LSV
Sbjct: 1469 NTYQLYLTSHNKIGSSPSSPVLSV 1492


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 343  NMYSIQLRTVNVAGEKPKFPRLSV 272
            N Y + L + N  G  P  P LSV
Sbjct: 1465 NTYQLYLTSHNKIGSSPSSPVLSV 1488


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 296 FLSGNIDSSKLN 331
           +L G+IDSSK+N
Sbjct: 507 YLYGSIDSSKIN 518


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 385 KSSESPDESSL*IVNMYSIQLRTVNVAGEKPKFPR 281
           K + + DE    I+N   + L+     G KP F R
Sbjct: 139 KPTTTSDELKRDIINPEDVMLKRRTGEGSKPIFER 173


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 385 KSSESPDESSL*IVNMYSIQLRTVNVAGEKPKFPR 281
           K + + DE    I+N   + L+     G KP F R
Sbjct: 139 KPTTTSDELKRDIINPEDVMLKRRTGEGSKPIFER 173


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 385 KSSESPDESSL*IVNMYSIQLRTVNVAGEKPKFPR 281
           K + + DE    I+N   + L+     G KP F R
Sbjct: 139 KPTTTSDELKRDIINPEDVMLKRRTGEGSKPIFER 173


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 385 KSSESPDESSL*IVNMYSIQLRTVNVAGEKPKFPR 281
           K + + DE    I+N   + L+     G KP F R
Sbjct: 139 KPTTTSDELKRGIINPEDVMLKRRTGEGSKPIFER 173


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 385 KSSESPDESSL*IVNMYSIQLRTVNVAGEKPKFPR 281
           K + + DE    I+N   + L+     G KP F R
Sbjct: 139 KPTTTSDELKRDIINPEDVMLKRRTGEGSKPIFER 173


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 385 KSSESPDESSL*IVNMYSIQLRTVNVAGEKPKFPR 281
           K + + DE    I+N   + L+     G KP F R
Sbjct: 139 KPTTTSDELKRDIINPEDVMLKRRTGEGSKPIFER 173


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 385 KSSESPDESSL*IVNMYSIQLRTVNVAGEKPKFPR 281
           K + + DE    I+N   + L+     G KP F R
Sbjct: 139 KPTTTSDELKRDIINPEDVMLKRRTGEGSKPIFER 173


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 385 KSSESPDESSL*IVNMYSIQLRTVNVAGEKPKFPR 281
           K + + DE    I+N   + L+     G KP F R
Sbjct: 139 KPTTTSDELKRDIINPEDVMLKRRTGEGSKPIFER 173


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 105 TQYLPRSLCFNLVH 64
           T YL R+ C N +H
Sbjct: 27  TMYLVRAFCRNCIH 40


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 105 TQYLPRSLCFNLVH 64
           T YL R+ C N +H
Sbjct: 475 TMYLVRAFCRNCIH 488


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,960
Number of Sequences: 438
Number of extensions: 2257
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)