Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0029
         (835 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.3  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   3.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   9.1  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 191 PRCSRRIPELLCQQLFRLIESSEVVEAA 274
           P C R   +  C++LFR+ +SS +  A+
Sbjct: 883 PTCWRECDKATCEKLFRMKKSSALRPAS 910


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -3

Query: 236 IVVGTEVQEFSLSTLD 189
           +V+GTEV+EF ++ +D
Sbjct: 444 VVLGTEVREFVVNYID 459


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 677 ILSARSPQTFYWSH 636
           I++A  PQ  YW H
Sbjct: 332 IVTADQPQDVYWMH 345


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,124
Number of Sequences: 336
Number of extensions: 3785
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22932949
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)