Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0029
(835 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz... 64 3e-11
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces... 53 6e-08
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 38 0.002
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 28 1.4
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 2.5
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 27 4.3
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 26 5.7
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo... 26 7.6
>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 63.7 bits (148), Expect = 3e-11
Identities = 27/73 (36%), Positives = 41/73 (56%)
Frame = +2
Query: 278 EGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFESMLTPE 457
E ++KYG S ICGT +HKE+E + F G+ +++ F NA +F +++ P
Sbjct: 213 EAMQKYGLSTCSSNAICGTYGLHKEVEELTANFVGKPAALVFSQGFSTNATVFSTLMCPG 272
Query: 458 DAVFSDALNHASI 496
+ SD LNH SI
Sbjct: 273 SLIISDELNHTSI 285
>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 52.8 bits (121), Expect = 6e-08
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +2
Query: 257 EVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLF 436
++ EA + ++ YG G R I G LE L+ H + +++GSC+ AN
Sbjct: 192 KIREAMHQCIETYGGGAGGTRNIAGHNQHAVRLEKSLADLHQKPAALVFGSCYVANDATL 251
Query: 437 ESM--LTPEDAVFSDALNHASIIDGIGYAR 520
++ P SD +NHAS+I+GI +R
Sbjct: 252 STLGRKLPNCIFLSDEMNHASMINGIRNSR 281
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 567 LVSAQRTRIKLIVTDGVFSMDGTVAPI 647
L S R K+I + V+SM G VAPI
Sbjct: 299 LASLPLNRPKIIAFESVYSMSGNVAPI 325
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 37.9 bits (84), Expect = 0.002
Identities = 25/93 (26%), Positives = 39/93 (41%)
Frame = +2
Query: 242 LIESSEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDA 421
L E+ + E A L++ G G GTQ H LE ++ F G E I+Y F
Sbjct: 140 LAENKHITECAVATLRECGLGACGPPGFYGTQDKHLRLEKDIASFIGVERAIVYAQSFQT 199
Query: 422 NAGLFESMLTPEDAVFSDALNHASIIDGIGYAR 520
+ + + D + D + +I GI +R
Sbjct: 200 ISSVIPAFSKRGDILVVDEACNFAIQKGIQISR 232
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 81 VAKLRDVLEDRLQEIKR-AKTWKHERVLTSPQDTKVRVQGAQGE 209
+ K ++L+ + ++R K W H RVLT D + RV+ + E
Sbjct: 545 IEKAAELLDQPKEIVERHLKFWLHHRVLTDIGDDRYRVRETEAE 588
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.5 bits (58), Expect = 2.5
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 703 QPCDRLLSGKLGRGHLKELLRCYWG 777
Q C+RL+ G++ + ++ LRC +G
Sbjct: 1076 QLCERLMEGEIDQNGFEDALRCLYG 1100
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +2
Query: 362 RLSQFHGREDTILYGSCFDANAGLFESMLTPEDAVFSDALNHASIIDGIGYARRRNTD 535
+L + +G +D + G +G E+ + FSDA +++ + G G N D
Sbjct: 49 KLDELNGAQDEEMRGLNIPGGSGYLENRYGRDKFTFSDAAVNSAGMGGSGIFSHNNAD 106
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 117 QEIKRAKTWKHERVLTSPQDTKVRVQGAQGEFLNFC 224
QE++ K K R+ T P+ R++G E+ NFC
Sbjct: 221 QEMEAMKMLKPLRI-TQPEGVNFRIKGRYIEWQNFC 255
>SPAC22F3.12c |rgs1||regulator of G-protein signaling
Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 139 LGNMRGCSHRRKTLRCGSKVLKENS*TSVPTT 234
L N++ R RCGSKVLK + ++P T
Sbjct: 88 LENLQLSQVNRIKSRCGSKVLKSTTKFTIPKT 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,267,490
Number of Sequences: 5004
Number of extensions: 66289
Number of successful extensions: 223
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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