Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0029
(835 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70311-1|CAA94376.2| 420|Caenorhabditis elegans Hypothetical pr... 134 7e-32
Z81127-5|CAB03390.2| 512|Caenorhabditis elegans Hypothetical pr... 51 9e-07
U80453-3|AAV58885.1| 434|Caenorhabditis elegans Serine palmitoy... 46 3e-05
U80453-2|AAK31446.1| 458|Caenorhabditis elegans Serine palmitoy... 46 3e-05
AF408761-1|AAO27840.1| 741|Caenorhabditis elegans Rap1GAP protein. 29 4.1
AF099925-2|AAC69505.1| 265|Caenorhabditis elegans Hypothetical ... 29 4.1
AF016660-2|AAB66048.2| 811|Caenorhabditis elegans Hypothetical ... 29 4.1
AF016660-1|AAK71368.1| 742|Caenorhabditis elegans Hypothetical ... 29 4.1
Z82058-5|CAI46585.1| 309|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr... 28 7.2
U97012-3|AAK39144.2| 588|Caenorhabditis elegans Groundhog (hedg... 28 7.2
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 9.5
>Z70311-1|CAA94376.2| 420|Caenorhabditis elegans Hypothetical
protein T25B9.1 protein.
Length = 420
Score = 134 bits (324), Expect = 7e-32
Identities = 75/166 (45%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Frame = +2
Query: 257 EVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLF 436
EV+ A ++ L+ +GAGLSSVRFICGTQ IHKELE +++QFHG EDTILY +CFDAN G+F
Sbjct: 85 EVIAAGQKALETHGAGLSSVRFICGTQDIHKELEQKIAQFHGTEDTILYAACFDANGGIF 144
Query: 437 ESMLTPEDAVFSDALNHASIIDGIGYARRRNTDTLTEI*PNWSTC*RTANKNQAYSNRRS 616
E M +D++ SD LNHASIIDGI ++ + + + + A ++
Sbjct: 145 EVMTGEQDSIISDELNHASIIDGIRLSKAKRLRYKHLDLGDLESKLKEAEDSRFRLIVTD 204
Query: 617 ILYGRDCGSNKRSEGIWRI--KYRALLVVDDSHATGFFRGNWAEGT 748
++ D G I + KY ALL +D+ HATGFF G GT
Sbjct: 205 GVFSMD-GDVAPLGDITSLAEKYNALLFIDECHATGFF-GKTGRGT 248
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/51 (50%), Positives = 34/51 (66%)
Frame = +3
Query: 102 LEDRLQEIKRAKTWKHERVLTSPQDTKVRVQGAQGEFLNFCANNYLGLSNH 254
L++ L IK A T+K ERV+ Q V+V G+ +NFCANNYLGLS+H
Sbjct: 33 LKNELAGIKNAGTFKTERVIQGRQGVLVKVTGSDKPVINFCANNYLGLSSH 83
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +3
Query: 567 LVSAQRTRIKLIVTDGVFSMDGTVAPI 647
L A+ +R +LIVTDGVFSMDG VAP+
Sbjct: 190 LKEAEDSRFRLIVTDGVFSMDGDVAPL 216
>Z81127-5|CAB03390.2| 512|Caenorhabditis elegans Hypothetical
protein T22G5.5 protein.
Length = 512
Score = 51.2 bits (117), Expect = 9e-07
Identities = 27/85 (31%), Positives = 41/85 (48%)
Frame = +2
Query: 251 SSEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAG 430
S EAA + KYG R G HK +E+ ++Q+ ED I++ F N+
Sbjct: 151 SGVCAEAAAAHIDKYGINCGGSRQEIGNHVAHKSVESTIAQYLNVEDAIVFPMGFATNSM 210
Query: 431 LFESMLTPEDAVFSDALNHASIIDG 505
S++ + SD LNHAS++ G
Sbjct: 211 NIPSLVDKGSLILSDRLNHASLVTG 235
>U80453-3|AAV58885.1| 434|Caenorhabditis elegans Serine palmitoyl
transferase familyprotein 1, isoform b protein.
Length = 434
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/89 (28%), Positives = 43/89 (48%)
Frame = +2
Query: 260 VVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFE 439
+ + A++ + KYG G R GT +H +LE L++F G E+ +LY F +
Sbjct: 81 IEDRAKQTIFKYGVGSCGPRGFYGTVDVHLDLEKELAKFMGCEEAVLYSYGFATVSSAIP 140
Query: 440 SMLTPEDAVFSDALNHASIIDGIGYARRR 526
+ D +F D + +I G+ +R R
Sbjct: 141 AYAKKGDVIFVDEGVNFAIQKGLQASRSR 169
>U80453-2|AAK31446.1| 458|Caenorhabditis elegans Serine palmitoyl
transferase familyprotein 1, isoform a protein.
Length = 458
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/89 (28%), Positives = 43/89 (48%)
Frame = +2
Query: 260 VVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFE 439
+ + A++ + KYG G R GT +H +LE L++F G E+ +LY F +
Sbjct: 105 IEDRAKQTIFKYGVGSCGPRGFYGTVDVHLDLEKELAKFMGCEEAVLYSYGFATVSSAIP 164
Query: 440 SMLTPEDAVFSDALNHASIIDGIGYARRR 526
+ D +F D + +I G+ +R R
Sbjct: 165 AYAKKGDVIFVDEGVNFAIQKGLQASRSR 193
>AF408761-1|AAO27840.1| 741|Caenorhabditis elegans Rap1GAP protein.
Length = 741
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 281 GLKKYGAGLSSVRFICGTQSIHKELENRLSQFH 379
G +KY GL + G QS+ E +NR FH
Sbjct: 336 GFQKYRGGLDTAHNQTGHQSVFSEFKNREIMFH 368
>AF099925-2|AAC69505.1| 265|Caenorhabditis elegans Hypothetical
protein K01A2.5 protein.
Length = 265
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 245 IESSEVVEAAREGLKKYGAGLSSVRFICGTQSIHKE 352
IESSE ++ + G KYG G + + ICG +K+
Sbjct: 7 IESSEHIKDTQIGYCKYGHGPNYILAICGAVGCYKK 42
>AF016660-2|AAB66048.2| 811|Caenorhabditis elegans Hypothetical
protein F53A10.2c protein.
Length = 811
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 281 GLKKYGAGLSSVRFICGTQSIHKELENRLSQFH 379
G +KY GL + G QS+ E +NR FH
Sbjct: 406 GFQKYRGGLDTAHNQTGHQSVFSEFKNREIMFH 438
>AF016660-1|AAK71368.1| 742|Caenorhabditis elegans Hypothetical
protein F53A10.2a protein.
Length = 742
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 281 GLKKYGAGLSSVRFICGTQSIHKELENRLSQFH 379
G +KY GL + G QS+ E +NR FH
Sbjct: 337 GFQKYRGGLDTAHNQTGHQSVFSEFKNREIMFH 369
>Z82058-5|CAI46585.1| 309|Caenorhabditis elegans Hypothetical
protein T27C5.12 protein.
Length = 309
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 559 IRSNLCEGIGISAPCIADPVYYG-RVVQS 476
+ SN+C+ G + C+ D +Y G R +Q+
Sbjct: 151 VNSNMCQSCGTNMTCVVDKIYTGLRKIQT 179
>Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical
protein F53B6.2b protein.
Length = 711
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 57 TRRQERAGVAKLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKVRVQ 194
T+ ++R V+K DVL ++ + + E +LT+P D K R Q
Sbjct: 422 TKNRQRVQVSK-EDVLREQASVLHKMNVSLIEALLTAPNDEKAREQ 466
>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
protein F53B6.2a protein.
Length = 1045
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 57 TRRQERAGVAKLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKVRVQ 194
T+ ++R V+K DVL ++ + + E +LT+P D K R Q
Sbjct: 756 TKNRQRVQVSK-EDVLREQASVLHKMNVSLIEALLTAPNDEKAREQ 800
>U97012-3|AAK39144.2| 588|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 9 protein.
Length = 588
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 306 KPAPYFFKPSLAASTTSDDSISLNSCWHRSSG 211
+P Y KP++ S D++ L +C+H SG
Sbjct: 448 QPTKYSSKPNVKYSYPPKDTLPLQTCFHNPSG 479
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 150 ERVLTSPQDTKVRVQGAQGEFLN-FCANNY 236
+R + SP++ + + A+GEF+N FC +Y
Sbjct: 859 DRAVLSPEEEQASMYNAEGEFVNPFCRLSY 888
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,085,792
Number of Sequences: 27780
Number of extensions: 371770
Number of successful extensions: 1117
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -