Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0029
(835 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23670.1 68418.m02775 serine C-palmitoyltransferase (LCB2) id... 59 3e-09
At5g04620.2 68418.m00464 aminotransferase class I and II family ... 59 4e-09
At3g48780.1 68416.m05327 serine C-palmitoyltransferase, putative... 58 7e-09
At5g04620.1 68418.m00465 aminotransferase class I and II family ... 48 8e-06
At4g36480.1 68417.m05180 aminotransferase class I and II family ... 48 8e-06
At3g48790.1 68416.m05328 serine C-palmitoyltransferase, putative... 47 2e-05
At1g16960.1 68414.m02059 expressed protein 32 0.41
At5g27230.1 68418.m03248 expressed protein ; expression support... 29 2.9
At5g54020.1 68418.m06719 expressed protein 29 3.8
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 29 5.0
At1g72210.1 68414.m08349 basic helix-loop-helix (bHLH) family pr... 29 5.0
At1g60380.1 68414.m06798 apical meristem formation protein-relat... 29 5.0
At3g59420.1 68416.m06627 receptor protein kinase, putative (ACR4... 28 6.6
At3g52700.1 68416.m05805 hypothetical protein teichoic acid bios... 28 6.6
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 28 8.8
At5g24350.1 68418.m02870 expressed protein weak similarity to ne... 28 8.8
At3g28300.1 68416.m03535 integrin-related protein 14a identical ... 28 8.8
At3g28290.1 68416.m03533 integrin-related protein 14a identical ... 28 8.8
>At5g23670.1 68418.m02775 serine C-palmitoyltransferase (LCB2)
identical to serine palmitoyltransferase [Arabidopsis
thaliana] GI:9309380; similar to serine
palmitoyltransferase from Solanum tuberosum
[GI:4995890], Homo sapiens [SP|O15270], Mus musculus
[SP|P97363]; contains Pfam profile PF00155:
aminotransferase, classes I and II
Length = 489
Score = 59.3 bits (137), Expect = 3e-09
Identities = 26/76 (34%), Positives = 45/76 (59%)
Frame = +2
Query: 278 EGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFESMLTPE 457
E LKK+ A S R GT S+H ELE +++F G+ +++G + N+ + ++
Sbjct: 126 ESLKKFSASTCSSRVDAGTTSVHAELEECVTRFVGKPAAVVFGMGYATNSAIIPVLIGKG 185
Query: 458 DAVFSDALNHASIIDG 505
+ SD+LNH+SI++G
Sbjct: 186 GLIISDSLNHSSIVNG 201
>At5g04620.2 68418.m00464 aminotransferase class I and II family
protein similar to 8-amino-7-oxononanoate synthase,
Bacillus sphaericus, PIR:JQ0512 [SP|P22806], Bacillus
subtilis [SP|P53556]; contains Pfam protile PF00155
aminotransferase, classes I and II
Length = 476
Score = 58.8 bits (136), Expect = 4e-09
Identities = 57/176 (32%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Frame = +2
Query: 260 VVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDAN----- 424
+ AA +K+YG G ICG + H+ LE+ L+Q +ED ++ + F AN
Sbjct: 121 ISNAAANAVKEYGMGPKGSALICGYTTYHRLLESSLAQLKKKEDCLVCPTGFAANMAAMV 180
Query: 425 -AGLFESMLTPED--------AVFSDALNHASIIDGIGYARRR-NTDTLTEI*PNWSTC* 574
G S+L A+FSDALNHASIIDG+ A R+ N + + C
Sbjct: 181 AIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFV-----YRHC- 234
Query: 575 RTANKNQAYSN---RRSI-----LYGRDCGSNKRSE-GIWRIKYRALLVVDDSHAT 715
+ N SN +R + L+ D E R KY LLV+DD+H T
Sbjct: 235 DMYHLNSLLSNCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGT 290
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = +3
Query: 558 IGALVSAQRTRIKLIVTDGVFSMDGTVAPIKGL 656
+ +L+S + + K++VTD +FSMDG AP++ L
Sbjct: 239 LNSLLSNCKMKRKVVVTDSLFSMDGDFAPMEEL 271
>At3g48780.1 68416.m05327 serine C-palmitoyltransferase, putative
similar to serine palmitoyltransferase from Solanum
tuberosum [GI:4995890], Homo sapiens [SP|O15270], Mus
musculus [SP|P97363]
Length = 489
Score = 58.0 bits (134), Expect = 7e-09
Identities = 25/76 (32%), Positives = 45/76 (59%)
Frame = +2
Query: 278 EGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFESMLTPE 457
E LKK+ A S R GT S+H ELE+ ++++ G+ +++G + N+ + ++
Sbjct: 126 ESLKKFSASTCSSRVDAGTTSVHAELEDCVAKYVGQPAAVIFGMGYATNSAIIPVLIGKG 185
Query: 458 DAVFSDALNHASIIDG 505
+ SD+LNH SI++G
Sbjct: 186 GLIISDSLNHTSIVNG 201
>At5g04620.1 68418.m00465 aminotransferase class I and II family
protein similar to 8-amino-7-oxononanoate synthase,
Bacillus sphaericus, PIR:JQ0512 [SP|P22806], Bacillus
subtilis [SP|P53556]; contains Pfam protile PF00155
aminotransferase, classes I and II
Length = 343
Score = 48.0 bits (109), Expect = 8e-06
Identities = 51/155 (32%), Positives = 71/155 (45%), Gaps = 24/155 (15%)
Frame = +2
Query: 323 ICGTQSIHKELENRLSQFHGREDTILYGSCFDANA------GLFESMLTPED-------- 460
ICG + H+ LE+ L+Q +ED ++ + F AN G S+L
Sbjct: 9 ICGYTTYHRLLESSLAQLKKKEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKV 68
Query: 461 AVFSDALNHASIIDGIGYARRR-NTDTLTEI*PNWSTC*RTANKNQAYSN---RRSI--- 619
A+FSDALNHASIIDG+ A R+ N + + C + N SN +R +
Sbjct: 69 AIFSDALNHASIIDGVRLAERQGNVEVFV-----YRHC-DMYHLNSLLSNCKMKRKVVVT 122
Query: 620 --LYGRDCGSNKRSE-GIWRIKYRALLVVDDSHAT 715
L+ D E R KY LLV+DD+H T
Sbjct: 123 DSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGT 157
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = +3
Query: 558 IGALVSAQRTRIKLIVTDGVFSMDGTVAPIKGL 656
+ +L+S + + K++VTD +FSMDG AP++ L
Sbjct: 106 LNSLLSNCKMKRKVVVTDSLFSMDGDFAPMEEL 138
>At4g36480.1 68417.m05180 aminotransferase class I and II family
protein similar to Serine palmitoyltransferase 1 (EC
2.3.1.50) from Homo sapiens [SP|O15269], Mus musculus
[SP|O35704], Cricetulus griseus [SP|O54695]
Length = 482
Score = 48.0 bits (109), Expect = 8e-06
Identities = 27/93 (29%), Positives = 42/93 (45%)
Frame = +2
Query: 242 LIESSEVVEAAREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDA 421
LI +++E+ L+KYG G R GT +H + E R+S+F G D+ILY
Sbjct: 122 LIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCETRISKFLGTPDSILYSYGLST 181
Query: 422 NAGLFESMLTPEDAVFSDALNHASIIDGIGYAR 520
D + +D H I +G+ +R
Sbjct: 182 MFSTIPCFCKKGDVIVADEGVHWGIQNGLQLSR 214
>At3g48790.1 68416.m05328 serine C-palmitoyltransferase, putative
similar to serine palmitoyltransferase from Solanum
tuberosum [GI:4995890], Homo sapiens [SP|O15270], Mus
musculus [SP|P97363]
Length = 350
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/61 (31%), Positives = 37/61 (60%)
Frame = +2
Query: 323 ICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFESMLTPEDAVFSDALNHASIID 502
+ GT ++H ELE +++F G+ +++G + N+ + ++ + SD+LNH SII+
Sbjct: 5 LSGTTAVHGELEECVAKFVGKPAAVVFGMGYLTNSAIISVLIGKGGLIISDSLNHTSIIN 64
Query: 503 G 505
G
Sbjct: 65 G 65
>At1g16960.1 68414.m02059 expressed protein
Length = 114
Score = 32.3 bits (70), Expect = 0.41
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +3
Query: 78 GVAKLRDVLEDRLQEIKRAKTWKHERVLTSPQDTKVR 188
G + R + E + ++I+R KTWKH + ++ + T++R
Sbjct: 2 GCSSSRTIAEGKKEKIRRPKTWKHPQPISRDELTQMR 38
>At5g27230.1 68418.m03248 expressed protein ; expression supported
by MPSS
Length = 948
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 230 QLFRLIESSEVVEAAREGLKKYGAGLSSVRFIC 328
+LFRL+ E V A E LKK L++++FIC
Sbjct: 332 KLFRLLGLEEKVSGAVETLKKKEEYLATLKFIC 364
>At5g54020.1 68418.m06719 expressed protein
Length = 556
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = -3
Query: 746 CPRPSFPERSRSHGCHQLLIKLCILSARSPQTFYWSH-SPVHREYSVCYYKLDSCSL 579
C R + R H C + LC S+ + W + SVCYY D C L
Sbjct: 434 CMRCTTLPRKVKHRCDDHFLSLCQGSSVNDSGDLWCDICETKTDPSVCYYTCDECGL 490
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 28.7 bits (61), Expect = 5.0
Identities = 24/62 (38%), Positives = 31/62 (50%)
Frame = -2
Query: 423 LASKQDP*RIVSSRPWN*DRRFSSSLCIL*VPQINLTELKPAPYFFKPSLAASTTSDDSI 244
L S P R+ S R R+ SS L ++ V ++ T KP + KP LA S DSI
Sbjct: 19 LCSFPPPRRLFSLRLRRFTRKSSSLLPLVAVSSLSATAAKPTRWREKPELAES----DSI 74
Query: 243 SL 238
SL
Sbjct: 75 SL 76
>At1g72210.1 68414.m08349 basic helix-loop-helix (bHLH) family
protein (bHLH096) identical to basic-helix-loop-helix
transcription factor [Arabidopsis thaliana] GI:20520637;
contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; PMID: 12679534
Length = 320
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 168 PQDTKVRVQGAQGEFLNFCANNYLG 242
PQDTK ++ QG+ F +NNY G
Sbjct: 36 PQDTKNNIKLGQGQGHGFASNNYNG 60
>At1g60380.1 68414.m06798 apical meristem formation protein-related
contains similarity to CUC1 [Arabidopsis thaliana]
gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
gi|1279640|emb|CAA63101
Length = 318
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 599 YSNRRSILYGRDCG-SNKRSEGIWRIKYRALLVV 697
+ N I R CG ++K +EG W+IK+R L++
Sbjct: 219 HDNGICIFANRTCGVTDKCNEGYWKIKHREKLIM 252
>At3g59420.1 68416.m06627 receptor protein kinase, putative (ACR4)
identical to putative receptor protein kinase ACR4
[Arabidopsis thaliana] GI:20302590; contains protein
kinase domain, Pfam:PF00069
Length = 895
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = -3
Query: 683 LCI-LSARSPQTFYWSHSPVHREYSVCYYKLDSCSL--CANKCSNSVKS 546
+C+ S P Y R VC Y SCS C++ CS+S S
Sbjct: 369 ICLPCSTSCPPGMYQKSVCTERSDQVCVYNCSSCSSHDCSSNCSSSATS 417
>At3g52700.1 68416.m05805 hypothetical protein teichoic acid
biosynthesis gene TagB, Staphylococcus aureus,
EMBL:SAU91741
Length = 196
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 692 VVDDSHATGFFRGNWAEGT*KSYCGVIGGGGYHLVSXPGAK 814
VV D+ FFR ++ GT S C V GG++L S G +
Sbjct: 136 VVSDTLGNLFFRNDYNFGTGGSVCYVHIFGGHYLASGKGLR 176
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/56 (25%), Positives = 21/56 (37%)
Frame = -3
Query: 746 CPRPSFPERSRSHGCHQLLIKLCILSARSPQTFYWSHSPVHREYSVCYYKLDSCSL 579
C R + + H C + LC + S + + SVCYY D C +
Sbjct: 416 CIRCATLPKKVKHRCDDHFLSLCHDAGNSSGDLWCDICETKTDPSVCYYTCDKCGV 471
>At5g24350.1 68418.m02870 expressed protein weak similarity to
neuroblastoma-amplified protein [Homo sapiens]
GI:4337460
Length = 2376
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 641 SNKRSEGIWRIKYRALLVVDDSHATGFFRGNWAE 742
S + G+W K+ L +VDDS F R N E
Sbjct: 108 SGSFTSGVWSEKHDVLGLVDDSETLFFIRANGEE 141
>At3g28300.1 68416.m03535 integrin-related protein 14a identical to
integrin-related At14a protein GI:11994573 [Arabidopsis
thaliana]
Length = 385
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/77 (23%), Positives = 35/77 (45%)
Frame = +2
Query: 272 AREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFESMLT 451
++E + KY A L + CG H EL++ S+ + ++ DA GL +
Sbjct: 4 SKENMLKYSAHLRAYNSACGD---HPELKSFDSELQQKTSNLINSFTSDAKTGL---VPL 57
Query: 452 PEDAVFSDALNHASIID 502
P+ A + + H + ++
Sbjct: 58 PQHAAYKEFTKHLAEVN 74
>At3g28290.1 68416.m03533 integrin-related protein 14a identical to
At14a protein GI:11994573 [Arabidopsis thaliana] [Gene
230 (1), 33-40 (1999)], At14a protein [Arabidopsis
thaliana] GI:4589123
Length = 385
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/77 (23%), Positives = 35/77 (45%)
Frame = +2
Query: 272 AREGLKKYGAGLSSVRFICGTQSIHKELENRLSQFHGREDTILYGSCFDANAGLFESMLT 451
++E + KY A L + CG H EL++ S+ + ++ DA GL +
Sbjct: 4 SKENMLKYSAHLRAYNSACGD---HPELKSFDSELQQKTSNLINSFTSDAKTGL---VPL 57
Query: 452 PEDAVFSDALNHASIID 502
P+ A + + H + ++
Sbjct: 58 PQHAAYKEFTKHLAEVN 74
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,448,724
Number of Sequences: 28952
Number of extensions: 360941
Number of successful extensions: 1072
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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