Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0028
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29535-3|AAK31458.1|  556|Caenorhabditis elegans Hypothetical pr...    31   0.96 
Z49910-4|CAA90122.2|  173|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AC006676-3|AAK71381.3|  157|Caenorhabditis elegans Hypothetical ...    29   2.9  
AC024793-4|AAF60694.2|  318|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z73908-5|CAA98129.2|  325|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>U29535-3|AAK31458.1|  556|Caenorhabditis elegans Hypothetical
           protein C25H3.6a protein.
          Length = 556

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 693 TSCPSTPTQNFSVAKATIRDSSXIVSXKSEGEPGH 797
           T  P TPT + S A+  ++ +S + +  S+  PGH
Sbjct: 231 TMAPQTPTMSVSAARKAVQSTSELFAQMSQTLPGH 265


>Z49910-4|CAA90122.2|  173|Caenorhabditis elegans Hypothetical
           protein F44G4.6 protein.
          Length = 173

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +1

Query: 238 MAGVESNHLQHDTYGMS--VVYVLIDL 312
           M+GV SN+L HD + MS   +Y+L+ L
Sbjct: 25  MSGVGSNYLSHDPFSMSFAFIYILVSL 51


>AC006676-3|AAK71381.3|  157|Caenorhabditis elegans Hypothetical
           protein M04F3.2 protein.
          Length = 157

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 680 DSVGVVKTGINGRKKARGGKQEGED 606
           DS GV + G  GR++ARGG +  +D
Sbjct: 113 DSRGVFRGGFRGRREARGGFRRSDD 137


>AC024793-4|AAF60694.2|  318|Caenorhabditis elegans Hypothetical
           protein Y48G1BL.1 protein.
          Length = 318

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = -2

Query: 227 GSRTGILKLFKTALTSATRAVWF----WSLN*ATFVSSRKHLYTTRTEGEK*HFSGK 69
           GSR    K F   LTS T   W     W++      S+RK   +TRT G   H S +
Sbjct: 19  GSRRRSRKTFTAKLTSPTFRRWSSTEKWTVASREIGSARKRFCSTRTPGAAIHSSNR 75


>Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical
           protein F20D1.7 protein.
          Length = 695

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 205 FNIPVLDPNFSMAGVESNHLQHDTYGMSVV 294
           F   +LDP+FS    E  H+ ++ YG  VV
Sbjct: 457 FTTTLLDPSFSRNHEERIHISNEYYGFDVV 486


>Z73908-5|CAA98129.2|  325|Caenorhabditis elegans Hypothetical
           protein F53B2.4 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 606 IFPFLFSSPRLLPTIYPCLYNTYRIKLEVTSCP 704
           +FPFL S+ RL+P  +P  +N    +L   + P
Sbjct: 126 LFPFLLSTLRLIPVYFPRRHNQLCARLSNFAIP 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,810,850
Number of Sequences: 27780
Number of extensions: 327538
Number of successful extensions: 735
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)