Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0028
         (801 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42980.1 68415.m05332 aspartyl protease family protein contai...    29   2.7  
At5g55870.1 68418.m06964 hypothetical protein contains Pfam prof...    28   8.3  

>At2g42980.1 68415.m05332 aspartyl protease family protein contains
           pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 527

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 208 NIPVLDPNFSMAGVESNHLQHDTYGMSVV 294
           + PVLDP F+++G+E N++     G++ V
Sbjct: 434 DFPVLDPCFNVSGIEENNIHLPELGIAFV 462


>At5g55870.1 68418.m06964 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 224

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
 Frame = +1

Query: 184 VNAVLNNFNIPVLDPNFSMAGVESNHLQ------HDTYGMSVVYVLIDLD-LNARRGY-- 336
           +N  L N N    +  F  +   SNH++         YG+SV+Y++  ++ LN ++ +  
Sbjct: 144 INTFLTNTNQHAQNHLFMDSKTLSNHIKIKIHQFQSKYGLSVIYIINSINLLNQKKKFHE 203

Query: 337 VSFDLSF 357
           + FD+ F
Sbjct: 204 IDFDMDF 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,589,746
Number of Sequences: 28952
Number of extensions: 295698
Number of successful extensions: 548
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)