Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0026
(614 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|... 118 9e-28
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 40 4e-04
SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1 famil... 29 0.40
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 2.2
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c... 26 5.0
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 5.0
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 25 6.6
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 25 6.6
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 25 8.7
>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
2|||Manual
Length = 209
Score = 118 bits (283), Expect = 9e-28
Identities = 70/201 (34%), Positives = 113/201 (56%), Gaps = 1/201 (0%)
Frame = +2
Query: 11 LPLAATMQEDEQSACNILEYQNQAKMLFRKLSPQSPMRCSIETGPYLFHYLIENHICYLV 190
LPLAA++ +DE + N+ ++ QAK++ ++LSP S R SIE+G Y FHYLI+N ICYL
Sbjct: 7 LPLAASV-DDESTERNLESHKKQAKLILKRLSPTSEKRASIESGDYTFHYLIDNGICYLC 65
Query: 191 LCERNYSKRLAFNYLEEIAQESSNS-TDTG*TP*LVXXXXXXXXXXXXXXGKQYAEXXXX 367
+CE++Y ++LAF+YLEE+A E NS + P L + Y
Sbjct: 66 ICEQSYPRKLAFSYLEELAGEFWNSFGEEALQPGLRPYAFVQFDTFMQKSKRVY----NT 121
Query: 368 XXXXXXXSHLAPQLGDVQRIMMQNIDDVLQRGAILSELDTKTQNLFDMSQKYRKDATYLN 547
L +L DV R+M +NI+D+L RG L ++ + +L S KY+K A +N
Sbjct: 122 PRANDNLDKLNTELKDVTRVMTKNIEDLLYRGDSLEKMADLSSDLRYSSAKYKKAARRVN 181
Query: 548 TKSMLVKVTAGAVIVLVIVLY 610
+++ + ++I L+ +++
Sbjct: 182 LEALWRQYGPVSIIALLFLIF 202
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 292 RPYTFIEFDTCMQ 330
RPY F++FDT MQ
Sbjct: 101 RPYAFVQFDTFMQ 113
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 39.5 bits (88), Expect = 4e-04
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +2
Query: 404 QLGDVQRIMMQNIDDVLQRGAILSELDTKTQNLFDMSQKYRKDATYLNTK------SMLV 565
Q+ D IM +NI V +RG L L KT NL +Q +R+ A + K M +
Sbjct: 38 QIDDTVGIMRENISKVSERGERLDSLQDKTDNLAVSAQGFRRGANRVRKKMWWKDMRMRL 97
Query: 566 KVTAGAVIVLVIVL 607
+ G +I+LV+++
Sbjct: 98 CIIIGIIILLVVII 111
>SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 153
Score = 29.5 bits (63), Expect = 0.40
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 296 GRVTVFNLCPYCWKIPVLFPRDN*MLVVYC 207
G + +CP C K+P++ RDN M V C
Sbjct: 18 GYTLLDTICPKCEKVPMMRLRDNPMFCVSC 47
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 152 FHYLIENHICYLVLCERNYSKRLAF-NYLEE 241
FHY+ E HIC++ YS AF +YL E
Sbjct: 437 FHYIPEKHICFVTFI--TYSAANAFHDYLAE 465
>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 164 IENHICYLVLCERNYSKRLAFNY 232
I+N L E NYSKRL FN+
Sbjct: 289 IDNSKFINYLIEENYSKRLEFNF 311
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 586 NGSGGHLHQHRLRVEIRGVLPVLLRHIE 503
N G + +H LR GV P++L+H +
Sbjct: 598 NFQNGQVIEHSLRRNQLGVAPIILKHFD 625
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 3/24 (12%)
Frame = -1
Query: 197 HTGP-NNICDFQSNNG--RDTGRF 135
+TG N+IC+FQS +G +TGRF
Sbjct: 638 YTGDGNDICEFQSRSGFCVETGRF 661
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +1
Query: 466 YTVRTGHEDAKPIRYVAEVPEGRHVSQHEVDAGEGDRRSRYRARD 600
Y GH+ + +R A+ +H + GD R R R RD
Sbjct: 113 YVDDNGHDQGQNVRTKAKEITSLLEDEHALKEARGDSRERDRDRD 157
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 477 NWTRRRKTYSICRRS 521
NW R++T ICRRS
Sbjct: 339 NWLERQQTCPICRRS 353
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,098,367
Number of Sequences: 5004
Number of extensions: 37873
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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