Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0026
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)             120   1e-35
SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)               104   5e-23
SB_33522| Best HMM Match : SCPU (HMM E-Value=6.8)                      39   0.003
SB_59514| Best HMM Match : LRR_1 (HMM E-Value=0.16)                    29   3.0  

>SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  120 bits (288), Expect(2) = 1e-35
 Identities = 65/157 (41%), Positives = 94/157 (59%)
 Frame = +2

Query: 5   DGLPLAATMQEDEQSACNILEYQNQAKMLFRKLSPQSPMRCSIETGPYLFHYLIENHICY 184
           DGLPLAA+M  D++++  + +YQ+QAKMLFRKL+  SP R SIE+G  +FHY++EN +C+
Sbjct: 9   DGLPLAASMPSDQETSQVLTQYQSQAKMLFRKLTNHSPARSSIESGNMMFHYILENSVCF 68

Query: 185 LVLCERNYSKRLAFNYLEEIAQESSNSTDTG*TP*LVXXXXXXXXXXXXXXGKQYAEXXX 364
           L L ++ +SKR AF++LE+IA E +       +                   + Y +   
Sbjct: 69  LTLTDKPFSKRAAFSFLEDIASEFNREYGHQVSRATRPYPFIEFDTYMQKAKRNYQD--- 125

Query: 365 XXXXXXXXSHLAPQLGDVQRIMMQNIDDVLQRGAILS 475
                   + L  +L DVQR+M+QNIDDVLQRG  LS
Sbjct: 126 -SRTRRNLNRLNDELVDVQRVMVQNIDDVLQRGEQLS 161



 Score = 48.0 bits (109), Expect(2) = 1e-35
 Identities = 22/46 (47%), Positives = 31/46 (67%)
 Frame = +2

Query: 473 SELDTKTQNLFDMSQKYRKDATYLNTKSMLVKVTAGAVIVLVIVLY 610
           S LD K  NL  +S+KY+KDATYLN +S   K  A A++  +I++Y
Sbjct: 201 SLLDDKAGNLRFVSEKYKKDATYLNLRSAYAKYAALAIVCTIIIIY 246



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = +1

Query: 259 QQYGHRLNTVTRPYTFIEFDTCMQ 330
           ++YGH+++  TRPY FIEFDT MQ
Sbjct: 94  REYGHQVSRATRPYPFIEFDTYMQ 117


>SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score =  104 bits (250), Expect = 5e-23
 Identities = 45/83 (54%), Positives = 66/83 (79%)
 Frame = +2

Query: 5   DGLPLAATMQEDEQSACNILEYQNQAKMLFRKLSPQSPMRCSIETGPYLFHYLIENHICY 184
           DGLPLAA+M  D++++  + +YQ+QAKMLFRKL+  SP R SIE+G  +FHY++EN +C+
Sbjct: 9   DGLPLAASMPSDQETSQVLTQYQSQAKMLFRKLTNHSPARSSIESGNMMFHYILENSVCF 68

Query: 185 LVLCERNYSKRLAFNYLEEIAQE 253
           L L ++ +SKR AF++LE+IA E
Sbjct: 69  LTLTDKPFSKRAAFSFLEDIASE 91



 Score = 32.3 bits (70), Expect = 0.32
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +1

Query: 259 QQYGHRLNTVTRPYTFIEF 315
           ++YGH+++  TRPY FIEF
Sbjct: 94  REYGHQVSRATRPYPFIEF 112


>SB_33522| Best HMM Match : SCPU (HMM E-Value=6.8)
          Length = 295

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 15/58 (25%), Positives = 33/58 (56%)
 Frame = +2

Query: 68  YQNQAKMLFRKLSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEE 241
           +Q     +  K+ P +  +C+  +G Y FH ++E+ + YL + ++ + K+  + +LEE
Sbjct: 126 FQQVTYTILEKI-PGNDTKCTYVSGSYQFHVIVEDGLVYLCMADKEFGKKDPYAFLEE 182


>SB_59514| Best HMM Match : LRR_1 (HMM E-Value=0.16)
          Length = 320

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 440 IDDVLQRGAILSELDTKTQNLFDMSQKYRKDATYLNTKSMLVKVTA 577
           +DD LQR    +E D +T  L +   + R   T+L +K  ++++ A
Sbjct: 273 LDDYLQRNGFSNETDEQTSWLTNRRLELRHHVTFLGSKLFVLRLFA 318


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,169,233
Number of Sequences: 59808
Number of extensions: 301137
Number of successful extensions: 893
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)