Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0025
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    41   2e-04
SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch...    28   1.0  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    27   2.4  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    26   5.5  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    25   9.6  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   9.6  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 20/81 (24%), Positives = 32/81 (39%)
 Frame = +3

Query: 9   YPERYVECFIAEQNLVGVATGAACRDXXXXXXXXXXXXXXXXXDQIRMGAISQSNINLAG 188
           Y  RY+   I E  + G+  G A                      +RM A++ S +    
Sbjct: 411 YAGRYIRYGIREHGMAGIMNGLAVYGPIIPYGGTFLNFVSYAAGAVRMAALNNSRVIYVA 470

Query: 189 SHCGVSIGEDGPSQMGLEDLA 251
           +H  + +GEDGP+   +E  A
Sbjct: 471 THDSIGLGEDGPTHQPIETFA 491


>SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 125 EESSKCGDKHHGPVPAGCSRSHSN 54
           EE  KC +K HGP+P+   + + N
Sbjct: 52  EEFRKCWEKRHGPLPSISDKKNKN 75


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +2

Query: 332 NTRGICYIRTSRPNTAILYPNDEVFKVGQAKVL 430
           N +G+C + T+   TAI++P+    KVGQ ++L
Sbjct: 130 NPKGLCAMVTTVEKTAIVFPSR---KVGQLQIL 159


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 260 YGHGKVLQSHLTRTVLSDADS 198
           YGH ++   H+   +LSD+DS
Sbjct: 24  YGHSQLTPIHIAAALLSDSDS 44


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 65  YGSSLQGPGRGVCLHICCFLHKN 133
           Y + L+ P +G+C    C LH+N
Sbjct: 371 YQTILKSPRQGICSRWICDLHEN 393


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 597  AXSILQNCSLVQWLDGERVQHTSLHTF 517
            A +IL  C  ++WLDG  V  +S   F
Sbjct: 1014 AEAILLACPHLEWLDGSDVSQSSRAAF 1040


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,721
Number of Sequences: 5004
Number of extensions: 49492
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)