Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0025
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0141 + 15036249-15036339,15036834-15037768,15037968-15038081 31 1.1
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816... 30 1.4
02_04_0512 + 23565210-23566058,23566824-23568224 29 2.5
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 29 3.3
05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141... 29 3.3
06_01_0237 - 1808203-1809159,1809246-1809399,1809488-1809636,180... 29 4.3
03_01_0609 - 4474434-4475783 29 4.3
03_01_0351 - 2758646-2759518 28 5.7
09_03_0174 - 13097138-13098265 28 7.5
08_02_1237 + 25475219-25475916,25476127-25476320,25476407-254773... 28 7.5
06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053 28 7.5
06_01_0313 - 2250312-2250516,2250585-2250610,2250792-2251076,225... 28 7.5
04_03_0620 - 18088287-18088495,18089174-18089210,18089315-180893... 28 7.5
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602... 28 7.5
03_01_0026 + 246682-246866,247791-247915,248452-248625,249377-24... 28 7.5
09_06_0079 - 20732041-20732097,20732219-20732301,20732661-207328... 27 9.9
02_04_0138 - 20144653-20144685,20144992-20145081,20145405-201454... 27 9.9
>09_04_0141 + 15036249-15036339,15036834-15037768,15037968-15038081
Length = 379
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 367 SRSSDVTDASSVGC*FYCTLCRDCIRRVEDSSSRHCT 257
SR + T +SS FYCT+C + + +E + CT
Sbjct: 169 SRGAAATASSSASSEFYCTICMETVDAIERFAIPGCT 205
>04_03_0092 +
11079185-11079589,11081319-11081409,11081507-11081612,
11081694-11081976,11082062-11082210,11083582-11083735,
11083837-11084793
Length = 714
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 144 IRMGAISQSNINLAGSHCGVSIGEDGPSQMGLEDL 248
IR+ A+ S + +H + +GEDGP+ +E L
Sbjct: 497 IRLSALCGSRVIFVMTHDSIGLGEDGPTHQPVEQL 531
>02_04_0512 + 23565210-23566058,23566824-23568224
Length = 749
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 134 SSCEESSKCGDKHHGPVPAGCSRSHSN 54
SSC + KC HHG G + +H +
Sbjct: 500 SSCSSNGKCDHAHHGDAKCGNAENHGS 526
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/87 (25%), Positives = 34/87 (39%)
Frame = +3
Query: 9 YPERYVECFIAEQNLVGVATGAACRDXXXXXXXXXXXXXXXXXDQIRMGAISQSNINLAG 188
+PER + IAEQ+ V A G A + + + + A
Sbjct: 431 FPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHDVDLQRLPVRFAM 490
Query: 189 SHCGVSIGEDGPSQMGLEDLAMSVQCL 269
G+ +G DGP+ G D+A + CL
Sbjct: 491 DRAGL-VGADGPTHCGAFDVAY-MACL 515
>05_04_0284 -
19813179-19813340,19813464-19813748,19813850-19814131,
19814224-19814531,19814654-19814927,19815807-19816175,
19816372-19816434,19817495-19817789,19817818-19818008,
19818123-19818428,19818516-19818638
Length = 885
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/87 (24%), Positives = 33/87 (37%)
Frame = +3
Query: 9 YPERYVECFIAEQNLVGVATGAACRDXXXXXXXXXXXXXXXXXDQIRMGAISQSNINLAG 188
+P R + IAEQ+ V A G AC + + + + A
Sbjct: 600 FPNRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAM 659
Query: 189 SHCGVSIGEDGPSQMGLEDLAMSVQCL 269
G+ +G DGP+ G D+ + CL
Sbjct: 660 DRAGL-VGADGPTHCGAFDVTY-MACL 684
>06_01_0237 -
1808203-1809159,1809246-1809399,1809488-1809636,
1809715-1809997,1810087-1810192,1810293-1810383,
1810779-1811270
Length = 743
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 144 IRMGAISQSNINLAGSHCGVSIGEDGPSQMGLEDL 248
+R+ A+ ++ + +H + +GEDGP+ +E L
Sbjct: 526 MRISALCEAGVIYVMTHDSIGLGEDGPTHQPIEHL 560
>03_01_0609 - 4474434-4475783
Length = 449
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 468 PESRCTKHLLLLKNEKRRCGGSCVGPV--HHQAIGRGCSS 581
PE LL +K + RCGG VG + HH A G S+
Sbjct: 117 PEDNVGAALLQVKLVRYRCGGLVVGSICHHHTADGHSMSA 156
>03_01_0351 - 2758646-2759518
Length = 290
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 363 LDPTRLSCTPMMKYSRSDRPKYSVSPQRTECC*SE 467
LDP ++ P++KY R+ K S SPQ C SE
Sbjct: 85 LDPDVVAALPVVKYRRAASGK-SASPQECAVCLSE 118
>09_03_0174 - 13097138-13098265
Length = 375
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 333 TLEASVTSELLDPTRLSC-TPMMKYSRSDRPKYSV 434
TL+AS+T+ + L C TP M+Y ++RP YS+
Sbjct: 336 TLDASITN--IWSYELGCGTPTMEYWGTERPDYSI 368
>08_02_1237 +
25475219-25475916,25476127-25476320,25476407-25477302,
25477416-25477490,25477582-25477689,25477780-25477897,
25478007-25478142,25478228-25478372,25478460-25479080,
25479166-25479597
Length = 1140
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = -2
Query: 279 TVAVGTVRTWQGPPVP--SDSDRPL 211
TV V T R W+ PP+ DS+RP+
Sbjct: 540 TVEVSTSRAWRAPPLELFKDSERPI 564
>06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053
Length = 1613
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 430 PSVRKGPSVVDRSRNHAARSTCCC 501
P +KG ++ +RN +TCCC
Sbjct: 974 PDNKKGSRIIVTTRNEDVANTCCC 997
>06_01_0313 -
2250312-2250516,2250585-2250610,2250792-2251076,
2251289-2251567,2251817-2252121,2252581-2252860,
2253209-2253475
Length = 548
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/87 (21%), Positives = 36/87 (41%)
Frame = +3
Query: 9 YPERYVECFIAEQNLVGVATGAACRDXXXXXXXXXXXXXXXXXDQIRMGAISQSNINLAG 188
+P+R+ + IAEQ+ V + G AC + + + + A
Sbjct: 241 FPDRFFDLGIAEQHAVTFSAGLACGGLKPFCIIPSTFLQRAYDQIVEDVDMQKIPVRFAI 300
Query: 189 SHCGVSIGEDGPSQMGLEDLAMSVQCL 269
+ G+ +G +GP+ G D+ + CL
Sbjct: 301 TSAGL-VGSEGPTNSGPFDITF-MSCL 325
>04_03_0620 -
18088287-18088495,18089174-18089210,18089315-18089395,
18089771-18089838,18093361-18094219
Length = 417
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -1
Query: 463 DQQHSVLCGLT--EYFGLSDLEYFIIGVQDSRVG 368
D H +CG T EY G DLEY V D+ VG
Sbjct: 324 DDSHKNICGETIKEYIGDRDLEYNTNDVIDAVVG 357
>03_05_0136 +
21158917-21159939,21160183-21160241,21160259-21160294,
21160345-21160387,21160582-21160698,21162090-21162179,
21162329-21162436,21162547-21162588
Length = 505
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = -2
Query: 471 PAPINNTRSFAD*RSTLACPTLNTSSLGYKIAVLGLEVLM*QMPRVLAANSTARSVETAS 292
PAP +T S + +T L SL A L + ++PR A++ AR V A
Sbjct: 81 PAPAASTPSSSSSVATTLADHLAEDSLDAPPAALSRQRSCTELPRFADADAEARKVVVAR 140
Query: 291 DG*KTVAVG 265
G A+G
Sbjct: 141 SGGHASAIG 149
>03_01_0026 +
246682-246866,247791-247915,248452-248625,249377-249467,
249516-250554
Length = 537
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 55 LEWLREQPAGTGPWCLSPHLLLSSQE 132
L+W + PA PW P L++S +E
Sbjct: 412 LKWQKLYPANKYPWIPKPQLIISQEE 437
>09_06_0079 -
20732041-20732097,20732219-20732301,20732661-20732834,
20732927-20733059,20733226-20733310,20733527-20733650,
20733835-20733904,20734643-20734669,20734788-20734949
Length = 304
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 468 PESRCTKHLLLLKNEKRRCGGSCVGPVHHQAIGRGCS 578
P S + HL L + RR G + P H Q + GCS
Sbjct: 4 PSSLASSHLSRLA-DLRRAGVAAAAPAHPQQLRLGCS 39
>02_04_0138 -
20144653-20144685,20144992-20145081,20145405-20145489,
20146859-20146922,20149388-20149628
Length = 170
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -1
Query: 397 IIGVQDSRVGSRSSDVTDASSVGC*FYCTLCRDCIRRVED--SSSRHCT 257
+ + D V + + D S C + + C++R+ED + +HCT
Sbjct: 99 VASMSDEEVSDPKALLEDRSKAKCVYQWYEYQKCVKRIEDDETGQKHCT 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,472,881
Number of Sequences: 37544
Number of extensions: 381854
Number of successful extensions: 1132
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -