Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0025
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48907| Best HMM Match : Transket_pyr (HMM E-Value=0) 112 3e-25
SB_24503| Best HMM Match : Transket_pyr (HMM E-Value=0) 100 1e-21
SB_6655| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 4e-11
SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.36
SB_16665| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.10001e-40) 31 0.83
SB_51378| Best HMM Match : PAN (HMM E-Value=0.00096) 29 2.5
SB_26224| Best HMM Match : VWD (HMM E-Value=0) 28 5.8
SB_44017| Best HMM Match : SKIP_SNW (HMM E-Value=0) 28 5.8
>SB_48907| Best HMM Match : Transket_pyr (HMM E-Value=0)
Length = 548
Score = 112 bits (269), Expect = 3e-25
Identities = 59/131 (45%), Positives = 77/131 (58%)
Frame = +2
Query: 257 RTVPTATVFYPSDAVSTERAVELAANTRGICYIRTSRPNTAILYPNDEVFKVGQAKVLRQ 436
R +P TVFYPSDAVS ERAVELAANT G+ +IR SRP T ++Y N+E F +G+AK++RQ
Sbjct: 366 RALPNCTVFYPSDAVSCERAVELAANTTGMTFIRASRPATPVIYGNEETFTIGKAKIVRQ 425
Query: 437 SAKDRVLLIGAGITLHXXXXXXXXXXXXVWRLVCWTRSPSSHWTRLQFWRMLXAAEGRIL 616
SA D+VL+IGAG+TL + + A G+++
Sbjct: 426 SADDKVLVIGAGVTLAEALKAADELASSGVSVRVMDPFTIKPLDKDAIVEHAKACGGKVV 485
Query: 617 VVEDHYXAGSI 649
VVEDHY G I
Sbjct: 486 VVEDHYYEGGI 496
Score = 99.5 bits (237), Expect = 2e-21
Identities = 48/83 (57%), Positives = 55/83 (66%)
Frame = +3
Query: 6 AYPERYVECFIAEQNLVGVATGAACRDXXXXXXXXXXXXXXXXXDQIRMGAISQSNINLA 185
A+P+R++ECFIAEQN+VGVA G A R DQIRM A+S S IN+
Sbjct: 282 AHPDRFIECFIAEQNMVGVAVGCATRGRTIPFVSTFAAFFSRAYDQIRMAAVSDSTINIM 341
Query: 186 GSHCGVSIGEDGPSQMGLEDLAM 254
GSH G SIGEDG SQMGLEDLAM
Sbjct: 342 GSHVGCSIGEDGASQMGLEDLAM 364
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +1
Query: 508 MKKEGVEARVLDPFTIKPLDEAAVLENAXGC*GK 609
+ GV RV+DPFTIKPLD+ A++E+A C GK
Sbjct: 450 LASSGVSVRVMDPFTIKPLDKDAIVEHAKACGGK 483
>SB_24503| Best HMM Match : Transket_pyr (HMM E-Value=0)
Length = 562
Score = 100 bits (239), Expect = 1e-21
Identities = 47/84 (55%), Positives = 56/84 (66%)
Frame = +3
Query: 3 NAYPERYVECFIAEQNLVGVATGAACRDXXXXXXXXXXXXXXXXXDQIRMGAISQSNINL 182
NA+P+R++ECFIAEQN+VGVA G A R DQIRM A+SQS++N
Sbjct: 258 NAHPDRFIECFIAEQNMVGVAVGCATRGRAIPFVSTFAAFLCRASDQIRMAAVSQSSVNF 317
Query: 183 AGSHCGVSIGEDGPSQMGLEDLAM 254
GSH G SIGEDG SQM LED+AM
Sbjct: 318 VGSHVGCSIGEDGASQMALEDMAM 341
Score = 76.6 bits (180), Expect(2) = 4e-21
Identities = 34/57 (59%), Positives = 45/57 (78%)
Frame = +2
Query: 257 RTVPTATVFYPSDAVSTERAVELAANTRGICYIRTSRPNTAILYPNDEVFKVGQAKV 427
R +P + VFYPSDAV+ ERAVELAAN GI + R +RP++A++Y NDE F +G+AKV
Sbjct: 343 RALPGSVVFYPSDAVACERAVELAANYPGITFTRATRPDSAVIYANDEPFAIGKAKV 399
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +1
Query: 508 MKKEGVEARVLDPFTIKPLDEAAVLENAXGC*GK 609
++ EG+ R+LDPFT+KP+D+A ++ NA GK
Sbjct: 463 LELEGIHVRILDPFTVKPIDKAGIVANAKAANGK 496
Score = 42.7 bits (96), Expect(2) = 4e-21
Identities = 26/83 (31%), Positives = 38/83 (45%)
Frame = +2
Query: 401 VFKVGQAKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXXVWRLVCWTRSPSSHWTRLQF 580
+F +G+AKV+RQS D VL+I AG+TL + +
Sbjct: 427 MFDIGKAKVVRQSEDDHVLVIAAGVTLDEAMKAANHLELEGIHVRILDPFTVKPIDKAGI 486
Query: 581 WRMLXAAEGRILVVEDHYXAGSI 649
AA G+++VVEDHY G +
Sbjct: 487 VANAKAANGKVVVVEDHYYEGGL 509
>SB_6655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 65.3 bits (152), Expect = 4e-11
Identities = 51/145 (35%), Positives = 67/145 (46%), Gaps = 14/145 (9%)
Frame = +2
Query: 257 RTVPTATVFYPSDAVSTERAVELAANTRGI--CYIRTSRP--NTAILYPN---------- 394
R +P TVFYPSDAVS ERAVELAANT G C ++ P N +
Sbjct: 17 RALPNCTVFYPSDAVSCERAVELAANTTGASHCGLKLMWPVINERSMCSGSPGHDRGRRF 76
Query: 395 DEVFKVGQAKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXXVWRLVCWTRSPSSHWTRL 574
D+ A+++RQSA D+VL+IGAG+TL + +
Sbjct: 77 DQTNLRPMAEIVRQSADDKVLVIGAGVTLAEALKAADELASSGVSVRVMDPFTIKPLDKD 136
Query: 575 QFWRMLXAAEGRILVVEDHYXAGSI 649
A G+++VVEDHY G I
Sbjct: 137 AIVEHAKACGGKVVVVEDHYYEGGI 161
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +1
Query: 508 MKKEGVEARVLDPFTIKPLDEAAVLENAXGC*GK 609
+ GV RV+DPFTIKPLD+ A++E+A C GK
Sbjct: 115 LASSGVSVRVMDPFTIKPLDKDAIVEHAKACGGK 148
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3
Query: 213 EDGPSQMGLEDLAM 254
EDG SQMGLEDLAM
Sbjct: 2 EDGASQMGLEDLAM 15
>SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2051
Score = 32.3 bits (70), Expect = 0.36
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 264 CLLLLSSTRLMQSLQSVQ*N*QPTLEASVTSELLDPTRLSCTPM 395
CL L+S ++ + + VQ QP S +LDPT SCTP+
Sbjct: 478 CLDLVSKSQSVSNFGVVQLFTQPHPPQSTCCAMLDPTSFSCTPL 521
>SB_16665| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.10001e-40)
Length = 935
Score = 31.1 bits (67), Expect = 0.83
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 189 SHCGVSIGEDGPSQMGLEDLAMSVQCLLLLSSTRLMQSLQSVQ 317
S CGV + E G SQ G++ + QC +LL + + +Q +Q
Sbjct: 830 SQCGVQVIEGGESQRGVQFIEGLSQCGVLLIEGKSQRGVQLIQ 872
>SB_51378| Best HMM Match : PAN (HMM E-Value=0.00096)
Length = 279
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 250 PCPYSAYCYCLLPV*CSLYRACSRISSQHSRHLLHQN 360
PCP+SA C +L + +I+S +RH L +N
Sbjct: 145 PCPHSANSICTAQYPQTLAKIIEKIASMQTRHYLVEN 181
>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
Length = 736
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 236 TGGPCHVRTVPTATVFYPSDAVSTERAVELAANTRGIC 349
TG C T+ ++ P +V RAV +A+ T G C
Sbjct: 179 TGHRCEQETIMADSLNSPHTSVRAARAVTIASRTMGAC 216
>SB_44017| Best HMM Match : SKIP_SNW (HMM E-Value=0)
Length = 754
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +2
Query: 104 LHICCFLHKNF*PNSY--GCY*SVQH*PC 184
LH CC++ KN+ Y GCY SV PC
Sbjct: 88 LHPCCYIEKNWLAEKYSGGCYVSVV--PC 114
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,971,550
Number of Sequences: 59808
Number of extensions: 430712
Number of successful extensions: 1256
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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