Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0025
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...   113   1e-25
AL110477-9|CAB54333.1|  540|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z81058-11|CAH60760.1|  201|Caenorhabditis elegans Hypothetical p...    27   8.9  
Z77663-14|CAB01214.2|  568|Caenorhabditis elegans Hypothetical p...    27   8.9  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U97007-8|AAB52293.1|  323|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AJ581300-1|CAE46113.1|  568|Caenorhabditis elegans flavin monoox...    27   8.9  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    27   8.9  

>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score =  113 bits (271), Expect = 1e-25
 Identities = 60/134 (44%), Positives = 83/134 (61%), Gaps = 3/134 (2%)
 Frame = +2

Query: 257 RTVPTATVFYPSDAVSTERAVELAANTRGICYIRTSRPNTAILYPNDEVFKVGQAKVLRQ 436
           RT+P ATVFYP+DAVS ERA ELAANT+G+ +IRT RP   +LY N+E F +GQAKV++Q
Sbjct: 436 RTIPGATVFYPTDAVSAERATELAANTKGVVFIRTGRPALPVLYDNEEPFHIGQAKVVKQ 495

Query: 437 SAKDRVLLIGAGITLH-XXXXXXXXXXXXVWRLVC--WTRSPSSHWTRLQFWRMLXAAEG 607
           SA+D+++L+G+G+TL+             +   V   +T  P    T  +         G
Sbjct: 496 SAQDKIVLVGSGVTLYESLKAAEELEKEGIHATVIDPFTIKPLDGKTIAEH---ALKVGG 552

Query: 608 RILVVEDHYXAGSI 649
           R++  EDHY AG I
Sbjct: 553 RVVTTEDHYAAGGI 566



 Score =  100 bits (240), Expect = 8e-22
 Identities = 47/82 (57%), Positives = 56/82 (68%)
 Frame = +3

Query: 9   YPERYVECFIAEQNLVGVATGAACRDXXXXXXXXXXXXXXXXXDQIRMGAISQSNINLAG 188
           +P++++ECFIAEQNLVGVA GA CRD                 DQIRM A+S +N+   G
Sbjct: 353 HPDQFIECFIAEQNLVGVAVGAQCRDRTIPFTSTFAAFFTRATDQIRMAAVSFANLKCVG 412

Query: 189 SHCGVSIGEDGPSQMGLEDLAM 254
           SH GVSIGEDGPSQM LEDLA+
Sbjct: 413 SHVGVSIGEDGPSQMALEDLAI 434



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 16/28 (57%), Positives = 22/28 (78%)
 Frame = +1

Query: 508 MKKEGVEARVLDPFTIKPLDEAAVLENA 591
           ++KEG+ A V+DPFTIKPLD   + E+A
Sbjct: 520 LEKEGIHATVIDPFTIKPLDGKTIAEHA 547


>AL110477-9|CAB54333.1|  540|Caenorhabditis elegans Hypothetical
           protein Y113G7B.14 protein.
          Length = 540

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -1

Query: 142 WSKVLVKKAANVETNTTARSLQAAPVATPTRFC 44
           W+++++ +A N+  + T +S   A +A+  R+C
Sbjct: 186 WTRIVLDEAHNIRDSNTKKSTAIATLASKNRWC 218


>Z81058-11|CAH60760.1|  201|Caenorhabditis elegans Hypothetical
           protein F11E6.11 protein.
          Length = 201

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 176 NVGLTNSTHTNLVKSSCEESSKCGDKHH 93
           N  L+NSTHTN +KS  E  +   +K +
Sbjct: 7   NATLSNSTHTNKLKSPVESGAYTTEKQN 34


>Z77663-14|CAB01214.2|  568|Caenorhabditis elegans Hypothetical
           protein F53F4.5 protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 360 LLDPTRLSCTPMMKYSRSDRPKYSVSPQRTECC*SEPESRCTKH 491
           L+D  R + TP+ + SR+++ KY VS Q  E    E    CT H
Sbjct: 98  LMDKIRFN-TPVKRISRNEQNKYIVSLQNGEIEEFEKLILCTGH 140


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
            F18C12.2b protein.
          Length = 2271

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -1

Query: 526  PHLLXXXXXXSKCFVQRDSGSDQQHSVLCGLTEYFGLSDLEYFIIGVQDSRVGSRSSDVT 347
            P L+       KC ++R++G   Q  + CG+  Y  L  L+  + GV  S   +  +++ 
Sbjct: 2130 PSLMRESAHALKCLMKRNTGELAQQMLSCGMVPYL-LQVLDSSMNGV--SNGAAARAEIV 2186

Query: 346  DA 341
            DA
Sbjct: 2187 DA 2188


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
            F18C12.2a protein.
          Length = 2279

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -1

Query: 526  PHLLXXXXXXSKCFVQRDSGSDQQHSVLCGLTEYFGLSDLEYFIIGVQDSRVGSRSSDVT 347
            P L+       KC ++R++G   Q  + CG+  Y  L  L+  + GV  S   +  +++ 
Sbjct: 2138 PSLMRESAHALKCLMKRNTGELAQQMLSCGMVPYL-LQVLDSSMNGV--SNGAAARAEIV 2194

Query: 346  DA 341
            DA
Sbjct: 2195 DA 2196


>U97007-8|AAB52293.1|  323|Caenorhabditis elegans Hypothetical
           protein ZC196.2 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 344 ICY-IRTSRPNTAILYPNDEVFKVGQAKVL 430
           +C+ ++TS PN  +  PN ++ K G+A+ L
Sbjct: 40  VCFKVKTSVPNMYVSRPNPDLLKPGEARQL 69


>AJ581300-1|CAE46113.1|  568|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 360 LLDPTRLSCTPMMKYSRSDRPKYSVSPQRTECC*SEPESRCTKH 491
           L+D  R + TP+ + SR+++ KY VS Q  E    E    CT H
Sbjct: 98  LMDKIRFN-TPVKRISRNEQNKYIVSLQNGEIEEFEKLILCTGH 140


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
            protein RME-8 protein.
          Length = 2279

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -1

Query: 526  PHLLXXXXXXSKCFVQRDSGSDQQHSVLCGLTEYFGLSDLEYFIIGVQDSRVGSRSSDVT 347
            P L+       KC ++R++G   Q  + CG+  Y  L  L+  + GV  S   +  +++ 
Sbjct: 2138 PSLMRESAHALKCLMKRNTGELAQQMLSCGMVPYL-LQVLDSSMNGV--SNGAAARAEIV 2194

Query: 346  DA 341
            DA
Sbjct: 2195 DA 2196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,025,857
Number of Sequences: 27780
Number of extensions: 304247
Number of successful extensions: 836
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)