Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0025
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60750.1 68416.m06796 transketolase, putative strong similari...    31   0.51 
At2g45290.1 68415.m05637 transketolase, putative strong similari...    31   0.67 
At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase (...    30   1.6  
At4g15560.1 68417.m02377 1-deoxy-D-xylulose 5-phosphate synthase...    29   2.7  
At3g21500.2 68416.m02713 1-deoxy-D-xylulose 5-phosphate synthase...    28   6.3  
At3g21500.1 68416.m02712 1-deoxy-D-xylulose 5-phosphate synthase...    28   6.3  
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p...    27   8.3  
At1g72220.1 68414.m08350 zinc finger (C3HC4-type RING finger) fa...    27   8.3  

>At3g60750.1 68416.m06796 transketolase, putative strong similarity
           to transketolase 1 [Capsicum annuum] GI:3559814;
           contains Pfam profiles PF02779: Transketolase, pyridine
           binding domain, PF02780: Transketolase, C-terminal
           domain, PF00456: Transketolase, thiamine diphosphate
           binding domain
          Length = 741

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 144 IRMGAISQSNINLAGSHCGVSIGEDGPSQMGLEDLA 251
           +R+ A+S++ +    +H  + +GEDGP+   +E +A
Sbjct: 523 MRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHIA 558


>At2g45290.1 68415.m05637 transketolase, putative strong similarity
           to transketolase 1 [Capsicum annuum] GI:3559814;
           contains Pfam profiles PF02779: Transketolase, pyridine
           binding domain, PF02780: Transketolase, C-terminal
           domain, PF00456: Transketolase, thiamine diphosphate
           binding domain
          Length = 741

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 144 IRMGAISQSNINLAGSHCGVSIGEDGPSQMGLEDLA 251
           +R+ A+S++ +    +H  + +GEDGP+   +E L+
Sbjct: 523 MRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLS 558


>At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase
           (CKI1) identical to GB:D87545
          Length = 1122

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 429 SVSPQRTECC*SEPESRCTKHLLLLKNEKRR 521
           ++SP+   C  S P+   ++ +LLLKNE+RR
Sbjct: 714 NLSPRFNNCLSSSPKQEGSRVVLLLKNEERR 744


>At4g15560.1 68417.m02377 1-deoxy-D-xylulose 5-phosphate synthase,
           putative / 1-deoxyxylulose-5-phosphate synthase,
           putative / DXP-synthase, putative (DEF) (CLA1) identical
           to SP|Q38854 Probable 1-deoxy-D-xylulose 5-phosphate
           synthase, chloroplast precursor (EC 4.1.3.37)
           (1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
           (DXPS). [Mouse-ear cress] {Arabidopsis thaliana}, DEF
           (deficient in photosynthesis) protein [Arabidopsis
           thaliana] GI:1399261
          Length = 717

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/87 (24%), Positives = 33/87 (37%)
 Frame = +3

Query: 9   YPERYVECFIAEQNLVGVATGAACRDXXXXXXXXXXXXXXXXXDQIRMGAISQSNINLAG 188
           +P R  +  IAEQ+ V  A G AC                     +    + +  +  A 
Sbjct: 439 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM 498

Query: 189 SHCGVSIGEDGPSQMGLEDLAMSVQCL 269
              G+ +G DGP+  G  D+   + CL
Sbjct: 499 DRAGL-VGADGPTHCGAFDVTF-MACL 523


>At3g21500.2 68416.m02713 1-deoxy-D-xylulose 5-phosphate synthase,
           putative / 1-deoxyxylulose-5-phosphate synthase,
           putative / DXP-synthase, putative strong similarity to
           1-D-deoxyxylulose 5-phosphate synthase [Lycopersicon
           esculentum] GI:5059160, DEF (deficient in
           photosynthesis) protein [Arabidopsis thaliana]
           GI:1399261; ; contains Pfam profiles PF02779:
           Transketolase, pyridine binding domain, PF02780:
           Transketolase, C-terminal domain
          Length = 629

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 21/87 (24%), Positives = 33/87 (37%)
 Frame = +3

Query: 9   YPERYVECFIAEQNLVGVATGAACRDXXXXXXXXXXXXXXXXXDQIRMGAISQSNINLAG 188
           +P R  +  IAEQ+ V  A G AC                     +    + +  +  A 
Sbjct: 385 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIYSSFMQRAYDQVVHDVDLQKLPVRFAI 444

Query: 189 SHCGVSIGEDGPSQMGLEDLAMSVQCL 269
              G+ +G DGP+  G  D+   + CL
Sbjct: 445 DRAGL-MGADGPTHCGAFDVTF-MACL 469


>At3g21500.1 68416.m02712 1-deoxy-D-xylulose 5-phosphate synthase,
           putative / 1-deoxyxylulose-5-phosphate synthase,
           putative / DXP-synthase, putative strong similarity to
           1-D-deoxyxylulose 5-phosphate synthase [Lycopersicon
           esculentum] GI:5059160, DEF (deficient in
           photosynthesis) protein [Arabidopsis thaliana]
           GI:1399261; ; contains Pfam profiles PF02779:
           Transketolase, pyridine binding domain, PF02780:
           Transketolase, C-terminal domain
          Length = 628

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 21/87 (24%), Positives = 33/87 (37%)
 Frame = +3

Query: 9   YPERYVECFIAEQNLVGVATGAACRDXXXXXXXXXXXXXXXXXDQIRMGAISQSNINLAG 188
           +P R  +  IAEQ+ V  A G AC                     +    + +  +  A 
Sbjct: 384 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIYSSFMQRAYDQVVHDVDLQKLPVRFAI 443

Query: 189 SHCGVSIGEDGPSQMGLEDLAMSVQCL 269
              G+ +G DGP+  G  D+   + CL
Sbjct: 444 DRAGL-MGADGPTHCGAFDVTF-MACL 468


>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
           protease, putative contains similarity to cysteine
           proteinase RD21A (thiol protease) GI:435619, SP:P43297
           from [Arabidopsis thaliana]
          Length = 452

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 448 PSVVDRSRNHAARSTCCC 501
           P V D+S    A+STCCC
Sbjct: 360 PVVCDKSNTCPAKSTCCC 377


>At1g72220.1 68414.m08350 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger); similar to GI:4928397
           from [Arabidopsis thaliana] (Plant Mol. Biol. 40 (4),
           579-590 (1999))
          Length = 413

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 330 PTLEASVTSELLDPTRLSCTPMMKYSRSDRPK-YSVSPQRTECC*SEPESRC 482
           PTL AS T++ LD +   C P+  Y+    P  Y++SPQ      S   S C
Sbjct: 11  PTL-ASETNKTLDCSNGVCDPICPYNCYPEPDYYTISPQLPPWSSSPQPSPC 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,267,627
Number of Sequences: 28952
Number of extensions: 284631
Number of successful extensions: 798
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)