Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0024
         (718 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7Q190 Cluster: ENSANGP00000013304; n=2; Culicidae|Rep:...    56   7e-07
UniRef50_UPI0000DB7853 Cluster: PREDICTED: similar to X-ray repa...    37   0.43 
UniRef50_Q54LY5 Cluster: ATP-dependent DNA helicase; n=1; Dictyo...    36   1.3  
UniRef50_Q6BXN4 Cluster: Debaryomyces hansenii chromosome B of s...    33   7.0  
UniRef50_Q54TM4 Cluster: Putative uncharacterized protein; n=1; ...    33   9.3  

>UniRef50_Q7Q190 Cluster: ENSANGP00000013304; n=2; Culicidae|Rep:
           ENSANGP00000013304 - Anopheles gambiae str. PEST
          Length = 734

 Score = 56.4 bits (130), Expect = 7e-07
 Identities = 30/80 (37%), Positives = 50/80 (62%)
 Frame = +3

Query: 270 IIILDNGRNVANADEKDKKSFYEMARECAARIIETKILSQAKNSYVGVILLGSKNTKNSV 449
           +IILD GR+ A A  +DK+SF++ A+ CA+ I++  I S A N +VG++L G+  T N +
Sbjct: 12  MIILDVGRSCAIATGRDKQSFFDKAKTCASLIVQRLIFS-APNDHVGIVLFGTDETNNQL 70

Query: 450 XXQAPGEFKHIELLSALQTP 509
              + G +++I     L+ P
Sbjct: 71  NVDS-GGYENITEAFELKPP 89



 Score = 33.5 bits (73), Expect = 5.3
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 491 IRPANTTWQMIRELPES--PSKSKGDWMDALIVAADHFKNGVYG 616
           ++P N  WQ +R L      ++S+  W DALIVA +  +NG  G
Sbjct: 86  LKPPN--WQTLRILQNQVVQTESEAGWFDALIVATNFLRNGALG 127


>UniRef50_UPI0000DB7853 Cluster: PREDICTED: similar to X-ray repair
           complementing defective repair in Chinese hamster cells
           5; n=1; Apis mellifera|Rep: PREDICTED: similar to X-ray
           repair complementing defective repair in Chinese hamster
           cells 5 - Apis mellifera
          Length = 517

 Score = 37.1 bits (82), Expect = 0.43
 Identities = 22/76 (28%), Positives = 43/76 (56%)
 Frame = +3

Query: 261 QGLIIILDNGRNVANADEKDKKSFYEMARECAARIIETKILSQAKNSYVGVILLGSKNTK 440
           + L+++L+ G  V N + ++  S +E A+  A R IE  I  + K+  + ++L+GS  TK
Sbjct: 5   ESLVLLLNIG--VTNPNIENNSSLFEKAKYIAQRKIEKMIFLKPKDE-IAIMLMGSSITK 61

Query: 441 NSVXXQAPGEFKHIEL 488
           N++  +   EF   ++
Sbjct: 62  NNLNSKYIEEFTDFQV 77


>UniRef50_Q54LY5 Cluster: ATP-dependent DNA helicase; n=1;
           Dictyostelium discoideum AX4|Rep: ATP-dependent DNA
           helicase - Dictyostelium discoideum AX4
          Length = 796

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
 Frame = +3

Query: 255 IDQGLIIILDNGRNVANADEKDKK---SFYEMARECAARIIETKILSQAKNSYVGVILLG 425
           + + +++ILD G  + + D        S  E A      + + K++   K   +G++L+G
Sbjct: 7   LKEAVVVILDIGLGMTSKDSDGTTTTTSSIEDALRSVTLLYQQKLI-YGKKDQLGLVLIG 65

Query: 426 SKNTKNSVXXQAPGEFKHIELLSALQTP 509
           +K TKN++  Q  G ++HI ++S ++ P
Sbjct: 66  TKGTKNNL--QDDG-YQHITVVSDIEEP 90


>UniRef50_Q6BXN4 Cluster: Debaryomyces hansenii chromosome B of
           strain CBS767 of Debaryomyces hansenii; n=1;
           Debaryomyces hansenii|Rep: Debaryomyces hansenii
           chromosome B of strain CBS767 of Debaryomyces hansenii -
           Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
          Length = 723

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 27/84 (32%), Positives = 39/84 (46%)
 Frame = +3

Query: 285 NGRNVANADEKDKKSFYEMARECAARIIETKILSQAKNSYVGVILLGSKNTKNSVXXQAP 464
           NGRN+++  E   K FY+        I+  KIL   K  Y+ VI   S  T+N     + 
Sbjct: 22  NGRNISDL-EYGLKYFYD--------IVTNKILRGRKTDYISVITCHSNRTEN--PFSSE 70

Query: 465 GEFKHIELLSALQTPLGK*LGNYR 536
             FK+IE++S    P    L  Y+
Sbjct: 71  DSFKNIEVVSNKIAPTYDDLRKYK 94


>UniRef50_Q54TM4 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 473

 Score = 32.7 bits (71), Expect = 9.3
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
 Frame = +2

Query: 14  MSILNPNMFT*PF----VLRCSCFNSVKLSLYLNPKKNTICLSNIIQNFXXXXXXCSFLI 181
           +SILN  + T  F     L C+  +  K+SL+LN  +N   L   I N+       +FLI
Sbjct: 366 LSILNQLIDTTSFPIINTLYCNSESIEKISLHLNRNENINTLKIHISNYIPFKEFENFLI 425

Query: 182 SEFHK-LESFTVVYSSYIATTK 244
           S   K L++  ++Y+ Y +  K
Sbjct: 426 SNQSKHLKTIKILYNCYFSFEK 447


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,942,890
Number of Sequences: 1657284
Number of extensions: 11329811
Number of successful extensions: 24859
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24853
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)