Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0024
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3423| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_49053| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=8)                29   3.8  
SB_9469| Best HMM Match : IRK (HMM E-Value=0)                          28   8.7  

>SB_3423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 463 LESSNI*NCYPPCKHHLAND 522
           LES ++ NCY PC+  LAND
Sbjct: 503 LESLSLYNCYGPCRLSLAND 522


>SB_49053| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=8)
          Length = 182

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 307 PMKKTKKAFMRWRVNVPLALLKPKFSVKLRTVMW 408
           P KK +K + RW    PL+ ++  ++  +RTVM+
Sbjct: 68  PAKKRRKRWRRWNRVSPLSRIRDNWATIVRTVMF 101


>SB_9469| Best HMM Match : IRK (HMM E-Value=0)
          Length = 520

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
 Frame = +3

Query: 267 LIIILDNGRNVANADEKDKKSF-YEMARECAARIIETKILSQAKNSYVGVILLGSKNTKN 443
           +I ++D          KD +S  +E+       +  T +L+QAK SY+G  +L     KN
Sbjct: 318 IIHVIDEESPFFTMTPKDLRSCDFELVAILEGTVEATGMLTQAKTSYIGEEILWGYEFKN 377

Query: 444 SVXXQA--PGEFK----HIELLSALQTPLGK*LGNYRSR 542
           ++   +   G F+    H + +  + TP    L  Y  +
Sbjct: 378 TLDHTSWKAGRFRVNYSHFDRVVPVDTPRVSALSFYEGK 416


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,799,338
Number of Sequences: 59808
Number of extensions: 359762
Number of successful extensions: 839
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)