Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0024
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   5.0  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 191 HKLESFTVVYSSYIATTKCLLNRSGLDNNF 280
           H   S   V+S  + T  CLL R   +NNF
Sbjct: 610 HASASEESVHSMELRTLPCLLPRPKSENNF 639


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 191 HKLESFTVVYSSYIATTKCLLNRSGLDNNF 280
           H   S   V+S  + T  CLL R   +NNF
Sbjct: 578 HASASEESVHSMELRTLPCLLPRPKSENNF 607


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 306 ADEKDKKSFYEMARECAA 359
           A++KDK SF+ M ++ A+
Sbjct: 451 AEKKDKNSFFNMFKKFAS 468


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 306 ADEKDKKSFYEMARECAA 359
           A++KDK SF+ M ++ A+
Sbjct: 451 AEKKDKNSFFNMFKKFAS 468


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,306
Number of Sequences: 438
Number of extensions: 3568
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)