Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0023
(765 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 160 4e-38
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 154 2e-36
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 153 6e-36
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 146 4e-34
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 136 6e-31
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 124 2e-27
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 122 1e-26
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 120 4e-26
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 119 7e-26
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 114 2e-24
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 106 5e-22
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 94 4e-18
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 83 6e-15
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 81 2e-14
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 78 2e-13
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 77 5e-13
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 73 8e-12
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 73 1e-11
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 69 2e-10
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 65 2e-09
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 64 5e-09
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 62 1e-08
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 60 4e-08
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 60 6e-08
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 57 4e-07
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 57 4e-07
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 54 3e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 54 3e-06
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 54 4e-06
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 50 6e-05
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 48 2e-04
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 46 8e-04
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 45 0.002
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 42 0.017
UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1; ... 35 2.5
UniRef50_Q3W3I5 Cluster: Putative uncharacterized protein; n=1; ... 34 3.4
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 34 4.4
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 160 bits (388), Expect = 4e-38
Identities = 72/87 (82%), Positives = 80/87 (91%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
HLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV Q
Sbjct: 8 HLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQ 67
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSMRR 261
RL+KVDGKVRTDPTYPAG+MDV+++ +
Sbjct: 68 RLVKVDGKVRTDPTYPAGYMDVITLEK 94
Score = 144 bits (348), Expect = 3e-33
Identities = 64/86 (74%), Positives = 73/86 (84%)
Frame = +3
Query: 255 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP 434
EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIRYPDP
Sbjct: 93 EKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDP 152
Query: 435 LIKVNDSIQLDIATTKIMDFIKFESG 512
LI NDS+Q+DIA+ KI D+IKF+SG
Sbjct: 153 LIHANDSVQVDIASGKITDYIKFDSG 178
Score = 127 bits (306), Expect = 3e-28
Identities = 60/83 (72%), Positives = 67/83 (80%)
Frame = +2
Query: 509 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNIS 688
GNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGK + IS
Sbjct: 178 GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYIS 237
Query: 689 LPRGKGXXXXXXXXERDKRIRSQ 757
LP+GKG ERDKR+ ++
Sbjct: 238 LPKGKG-VKLSIAEERDKRLAAK 259
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 154 bits (374), Expect = 2e-36
Identities = 70/85 (82%), Positives = 77/85 (90%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
HLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q
Sbjct: 8 HLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQ 67
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
R IK+DGKVRTD TYPAGFMDV+S+
Sbjct: 68 RFIKIDGKVRTDITYPAGFMDVISI 92
Score = 144 bits (348), Expect = 3e-33
Identities = 62/86 (72%), Positives = 74/86 (86%)
Frame = +3
Query: 255 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP 434
+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD RTIRYPDP
Sbjct: 93 DKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDP 152
Query: 435 LIKVNDSIQLDIATTKIMDFIKFESG 512
LIKVND+IQ+D+ T KI DFIKF++G
Sbjct: 153 LIKVNDTIQIDLETGKITDFIKFDTG 178
Score = 118 bits (285), Expect = 1e-25
Identities = 52/85 (61%), Positives = 68/85 (80%)
Frame = +2
Query: 509 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNIS 688
GNLCM+TGG NLGR+G I +RERHPGSFD+VH+KD+ G++FATRL+N+F+IGK + IS
Sbjct: 178 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 237
Query: 689 LPRGKGXXXXXXXXERDKRIRSQRS 763
LPRGKG ERDKR+ +++S
Sbjct: 238 LPRGKG-IRLTIAEERDKRLAAKQS 261
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 153 bits (370), Expect = 6e-36
Identities = 69/85 (81%), Positives = 76/85 (89%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
HLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q
Sbjct: 8 HLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQ 67
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
R IK+DGKVRTD TYP GFMDV+S+
Sbjct: 68 RFIKIDGKVRTDITYPTGFMDVISI 92
Score = 116 bits (279), Expect = 6e-25
Identities = 50/82 (60%), Positives = 66/82 (80%)
Frame = +2
Query: 512 NLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNISL 691
N+CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++FATRL+N+F+IGK + +SL
Sbjct: 211 NMCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKPWVSL 270
Query: 692 PRGKGXXXXXXXXERDKRIRSQ 757
PRGKG ERDKR+ ++
Sbjct: 271 PRGKG-IRLTIAEERDKRLAAK 291
Score = 93.5 bits (222), Expect(2) = 2e-27
Identities = 40/63 (63%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Frame = +3
Query: 336 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFE-SG 512
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF+ S
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 513 TCV 521
C+
Sbjct: 212 MCM 214
Score = 52.4 bits (120), Expect(2) = 2e-27
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +3
Query: 255 EKTNELFRLIYDVKGRFTIHRITPEEAK 338
+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 93 DKTGEHFRLIYDVKGRFTVHRITAEEAK 120
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 146 bits (355), Expect = 4e-34
Identities = 66/85 (77%), Positives = 75/85 (88%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
HLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ Q
Sbjct: 8 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQ 67
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
R I+VDGKVRTD TYPAGFMDVVS+
Sbjct: 68 RHIQVDGKVRTDKTYPAGFMDVVSI 92
Score = 126 bits (304), Expect = 6e-28
Identities = 56/88 (63%), Positives = 69/88 (78%)
Frame = +3
Query: 258 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 437
KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPL
Sbjct: 94 KTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPL 153
Query: 438 IKVNDSIQLDIATTKIMDFIKFESGTCV 521
IK ND+I+LD+ KI++FIKF+ G V
Sbjct: 154 IKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 102 bits (244), Expect = 1e-20
Identities = 48/86 (55%), Positives = 62/86 (72%)
Frame = +2
Query: 506 VGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNI 685
VGN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGK + +
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWV 236
Query: 686 SLPRGKGXXXXXXXXERDKRIRSQRS 763
SLP+GKG R KR+ SQ++
Sbjct: 237 SLPKGKGIKLTIIEEAR-KRLASQQA 261
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 136 bits (329), Expect = 6e-31
Identities = 60/92 (65%), Positives = 70/92 (76%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV IVK
Sbjct: 8 HLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKN 67
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSMRRLMNCF 276
R IK+DGK+RTD YP GFMDV+S+ R F
Sbjct: 68 RTIKIDGKIRTDTRYPVGFMDVLSIPRTKENF 99
Score = 104 bits (250), Expect = 2e-21
Identities = 44/85 (51%), Positives = 65/85 (76%)
Frame = +3
Query: 258 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 437
+T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRTIRYP P
Sbjct: 94 RTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRYPHPE 153
Query: 438 IKVNDSIQLDIATTKIMDFIKFESG 512
++ ND+I+L++ T KI+DF+KF+ G
Sbjct: 154 LQANDTIKLNLETGKIVDFVKFDIG 178
Score = 93.9 bits (223), Expect = 4e-18
Identities = 41/67 (61%), Positives = 50/67 (74%)
Frame = +2
Query: 506 VGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNI 685
+GN M+ GG +GRVG IV RE HPGSF+IVHIKD+ G+TF TRLNNVF+IGK +
Sbjct: 177 IGNTAMMIGGNGMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIGKGTETLV 236
Query: 686 SLPRGKG 706
+LP KG
Sbjct: 237 NLPLDKG 243
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 124 bits (300), Expect = 2e-27
Identities = 57/92 (61%), Positives = 68/92 (73%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+
Sbjct: 22 HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKR 81
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSMRRLMNCF 276
RL+KVDGKVRT+ YP G MDV+ + + F
Sbjct: 82 RLVKVDGKVRTNYRYPTGLMDVIELGKSNELF 113
Score = 99 bits (238), Expect = 6e-20
Identities = 42/85 (49%), Positives = 62/85 (72%)
Frame = +3
Query: 258 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 437
K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGRTI Y DP
Sbjct: 108 KSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPS 167
Query: 438 IKVNDSIQLDIATTKIMDFIKFESG 512
++V+D+++ +I T ++ IKF+ G
Sbjct: 168 VRVHDALKFNIKTGEVESVIKFKVG 192
Score = 77.8 bits (183), Expect = 3e-13
Identities = 36/67 (53%), Positives = 48/67 (71%)
Frame = +2
Query: 506 VGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNI 685
VG++ M+T G N+GRVGTI E+ SFDIVH+KD++G FATR+ NVF+IG+ I
Sbjct: 191 VGDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIGENEHPLI 250
Query: 686 SLPRGKG 706
SLP +G
Sbjct: 251 SLPAREG 257
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 122 bits (293), Expect = 1e-26
Identities = 60/88 (68%), Positives = 69/88 (78%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV KI Q
Sbjct: 19 HLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICMQ 77
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSMRRL 264
IKVDGK+RTD P MDV+S+ ++
Sbjct: 78 WFIKVDGKIRTDNNLPYWIMDVISIDKM 105
Score = 106 bits (254), Expect = 7e-22
Identities = 51/109 (46%), Positives = 68/109 (62%)
Frame = +3
Query: 222 LSCWIYGCCLNEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 401
L WI +K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV
Sbjct: 92 LPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVI 151
Query: 402 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGTCV*SREAVTWG 548
HD T+R+PD LIKVND+IQ+D+ T KI +KF++G WG
Sbjct: 152 HDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGGGNWG 199
Score = 70.1 bits (164), Expect = 6e-11
Identities = 31/62 (50%), Positives = 43/62 (69%)
Frame = +2
Query: 509 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNIS 688
GNLC++TGG N GR+G I +RERHP SFD H+KD+ ++F+ +F+I K + IS
Sbjct: 187 GNLCLVTGGGNWGRIGVITNRERHPVSFDTFHVKDANSNSFSI----IFVIDKGNKPWIS 242
Query: 689 LP 694
LP
Sbjct: 243 LP 244
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 120 bits (289), Expect = 4e-26
Identities = 51/75 (68%), Positives = 63/75 (84%)
Frame = +3
Query: 288 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 467
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 468 IATTKIMDFIKFESG 512
+ T KI DF KF++G
Sbjct: 136 LETGKITDFFKFDTG 150
Score = 116 bits (280), Expect = 5e-25
Identities = 53/68 (77%), Positives = 58/68 (85%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
HLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q
Sbjct: 8 HLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQ 67
Query: 181 RLIKVDGK 204
IK+DGK
Sbjct: 68 HFIKMDGK 75
Score = 106 bits (254), Expect = 7e-22
Identities = 44/66 (66%), Positives = 55/66 (83%)
Frame = +2
Query: 509 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNIS 688
GNLCM+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++FATRL+N+F+IGK IS
Sbjct: 150 GNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNIPWIS 209
Query: 689 LPRGKG 706
LP GKG
Sbjct: 210 LPHGKG 215
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 119 bits (287), Expect = 7e-26
Identities = 55/85 (64%), Positives = 63/85 (74%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
HLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I++Q
Sbjct: 5 HLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILRQ 64
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
L+ VD R D YPAGFMDVV +
Sbjct: 65 GLVHVDNHPRRDGKYPAGFMDVVEI 89
Score = 83.4 bits (197), Expect = 6e-15
Identities = 40/88 (45%), Positives = 52/88 (59%)
Frame = +3
Query: 258 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 437
KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG IRYPDP
Sbjct: 91 KTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIRYPDPH 150
Query: 438 IKVNDSIQLDIATTKIMDFIKFESGTCV 521
+ D+I ++ K +D IK G V
Sbjct: 151 TSIGDTIVYNVKEKKCVDLIKNRQGKAV 178
Score = 72.5 bits (170), Expect = 1e-11
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +2
Query: 509 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK-ARRRNI 685
G ++TGG N GR+G IV E HPG+F+I H+KD++G FATR N+F+IGK +
Sbjct: 175 GKAVIVTGGANRGRIGEIVKVECHPGAFNIAHLKDASGAEFATRAANIFVIGKDLNNLQV 234
Query: 686 SLPRGKGXXXXXXXXERDKRI 748
++P+ +G ER++R+
Sbjct: 235 TVPKQQG-LRMNVIQEREERL 254
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 114 bits (275), Expect = 2e-24
Identities = 50/86 (58%), Positives = 66/86 (76%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
H KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L I+K+
Sbjct: 8 HYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILKK 67
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSMR 258
I VDGKVR D +PAG MDV+S++
Sbjct: 68 NEIYVDGKVRADKNFPAGVMDVISIK 93
Score = 111 bits (267), Expect = 2e-23
Identities = 51/88 (57%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Frame = +3
Query: 261 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLI 440
T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGRTIR+P+ LI
Sbjct: 95 TKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIRFPNLLI 154
Query: 441 KVNDSIQLDIATTKIMDFIKFESGT-CV 521
K NDSI LD+ K++DFIKF G+ CV
Sbjct: 155 KSNDSIVLDLLNNKVIDFIKFSIGSLCV 182
Score = 65.7 bits (153), Expect = 1e-09
Identities = 30/78 (38%), Positives = 46/78 (58%)
Frame = +2
Query: 506 VGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNI 685
+G+LC++ G N+GR+G ++ GS IV +KD G +F+T+ N+F+IGK + I
Sbjct: 177 IGSLCVVIKGSNIGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIGKGTKSFI 236
Query: 686 SLPRGKGXXXXXXXXERD 739
SLPR +G E D
Sbjct: 237 SLPRFRGLRTLTKSLEHD 254
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 106 bits (255), Expect = 5e-22
Identities = 45/86 (52%), Positives = 62/86 (72%)
Frame = +3
Query: 255 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP 434
EKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTIR+P+P
Sbjct: 205 EKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNP 264
Query: 435 LIKVNDSIQLDIATTKIMDFIKFESG 512
IK+ D+++ D+ KI +F ESG
Sbjct: 265 EIKIGDTLKYDLVNNKIENFAHLESG 290
Score = 83.4 bits (197), Expect = 6e-15
Identities = 35/66 (53%), Positives = 47/66 (71%)
Frame = +2
Query: 509 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNIS 688
GN+C I G N+GRVG I E+H GSFDI H+KD+ G+ FATRL N+F++G+ ++ I
Sbjct: 290 GNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKSWIE 349
Query: 689 LPRGKG 706
LP G G
Sbjct: 350 LPSGDG 355
Score = 80.2 bits (189), Expect = 5e-14
Identities = 53/123 (43%), Positives = 66/123 (53%), Gaps = 31/123 (25%)
Frame = +1
Query: 1 HLKRLNAPKAWMLD-------------------------KLGGVY----APRPSTGPHKL 93
HLKR+NAPK+WML+ KL +Y A RPS GPHKL
Sbjct: 89 HLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPSQGPHKL 148
Query: 94 RECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGFMDVVSMRRLM 267
RE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G MDVV + +
Sbjct: 149 RESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEKTD 208
Query: 268 NCF 276
F
Sbjct: 209 QSF 211
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 93.9 bits (223), Expect = 4e-18
Identities = 42/87 (48%), Positives = 59/87 (67%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+ I+ +
Sbjct: 8 HLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAE 67
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSMRR 261
+ IKV+G+VRT+ +P G DVVS+ +
Sbjct: 68 KNIKVNGRVRTNSHFPVGLFDVVSIEK 94
Score = 68.9 bits (161), Expect = 1e-10
Identities = 32/81 (39%), Positives = 55/81 (67%)
Frame = +3
Query: 255 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP 434
EKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G +IR+ DP
Sbjct: 93 EKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGLSIRFCDP 151
Query: 435 LIKVNDSIQLDIATTKIMDFI 497
I + +I++ T+K++++I
Sbjct: 152 AIDLGYTIKISNETSKVIEYI 172
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 83.4 bits (197), Expect = 6e-15
Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = +1
Query: 1 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 177
H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E KI+
Sbjct: 11 HVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIIT 70
Query: 178 QRLIKVDGKVRTDPTYPAGFMDVVSMRR 261
+ I VDG VR +P +P G MDVV + R
Sbjct: 71 RGEIYVDGVVRKEPKFPVGIMDVVEIPR 98
Score = 36.3 bits (80), Expect = 0.83
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Frame = +3
Query: 258 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT--IRYPD 431
+T + +R++ + R + I+ EEA+ K+C++K + HDG+ + D
Sbjct: 98 RTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIED 157
Query: 432 P------LIKVNDSIQLDI------ATTKIMDFIKFESGTCV 521
P + V DS+ L++ + K++D I FE G V
Sbjct: 158 PTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWV 199
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 81.4 bits (192), Expect = 2e-14
Identities = 40/86 (46%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 177
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 178 QRLIKVDGKVRTDPTYPAGFMDVVSM 255
+ +KVDG VR D +P G MDV+ +
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDVIEI 88
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 78.2 bits (184), Expect = 2e-13
Identities = 34/85 (40%), Positives = 51/85 (60%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
+KVDGKVR D YP G MDV+ +
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIEL 87
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 77.0 bits (181), Expect = 5e-13
Identities = 37/85 (43%), Positives = 52/85 (61%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
HLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E KI++
Sbjct: 9 HLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQT 68
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
I +DG R + +PAG MDV+S+
Sbjct: 69 GKILIDGLKRKEYKHPAGLMDVLSI 93
Score = 37.9 bits (84), Expect = 0.27
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +2
Query: 509 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 667
G L ITGG+++G IV E DIV +++ G F T VFI+G+
Sbjct: 185 GKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ 237
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 72.9 bits (171), Expect = 8e-12
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = +1
Query: 4 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183
LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K++ +
Sbjct: 10 LKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEG 69
Query: 184 LIKVDGKVRTDPTYPAGFMDVVSM 255
+VDG VR D +P GFMDV+ +
Sbjct: 70 HFRVDGVVRKDYKFPVGFMDVIEV 93
Score = 50.0 bits (114), Expect = 6e-05
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +2
Query: 509 GNLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIGKARRRNI 685
G + +I GGRN+GRVG + S ++ G +V ++D++G+ F T L+ VF+IG R I
Sbjct: 187 GAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIG-LDRPVI 245
Query: 686 SLPRG 700
SLP G
Sbjct: 246 SLPEG 250
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 72.5 bits (170), Expect = 1e-11
Identities = 35/83 (42%), Positives = 50/83 (60%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E +I+
Sbjct: 11 HLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILAS 70
Query: 181 RLIKVDGKVRTDPTYPAGFMDVV 249
R+I+VDG+V TD +P G MDV+
Sbjct: 71 RVIEVDGRVVTDYKFPVGLMDVL 93
Score = 37.5 bits (83), Expect = 0.36
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Frame = +3
Query: 273 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI-------RYPD 431
+R++ D + I PEEA YKL +++R T HDGR + Y
Sbjct: 102 YRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNVLIRKGSEAYST 161
Query: 432 PL-IKVNDSIQLDIATTKIMDFIKFESGT 515
+ K D++ + I I+ + FE GT
Sbjct: 162 AISYKTYDALLITIPRQSIVSHVPFEVGT 190
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 68.5 bits (160), Expect = 2e-10
Identities = 32/85 (37%), Positives = 48/85 (56%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
+ VDGKVR D Y G D +S+
Sbjct: 65 GKVLVDGKVRKDYRYTVGMFDTISI 89
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 64.9 bits (151), Expect = 2e-09
Identities = 29/85 (34%), Positives = 44/85 (51%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
HLK APK W + + +PS G H + L L + +R+ LK A E +I+
Sbjct: 9 HLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINS 68
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
+ VDG+V D +P GFMD++ +
Sbjct: 69 GNVLVDGRVIKDYKFPVGFMDIIEI 93
Score = 49.2 bits (112), Expect = 1e-04
Identities = 27/88 (30%), Positives = 45/88 (51%)
Frame = +3
Query: 258 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 437
KT E++R++ D KGR +++I EE KLCK+ +T + HDG+ + +
Sbjct: 95 KTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDEND 152
Query: 438 IKVNDSIQLDIATTKIMDFIKFESGTCV 521
V D I L + +I + + + G CV
Sbjct: 153 YNVGDVIDLKVPDHEINEVFELKEGACV 180
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 63.7 bits (148), Expect = 5e-09
Identities = 34/85 (40%), Positives = 45/85 (52%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
+ VDGKVR D YP G MDVV +
Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVVEI 87
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 62.5 bits (145), Expect = 1e-08
Identities = 28/85 (32%), Positives = 48/85 (56%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
R + VDG++ TD G MDV+++
Sbjct: 65 RQVLVDGRIETDLGRGVGLMDVLTV 89
Score = 36.7 bits (81), Expect = 0.63
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +3
Query: 273 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD-PLIKVN 449
FR I DV G+ I+ + A KLC+V +T + HDGR I D L
Sbjct: 94 FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGRNILVSDAKLYDSG 153
Query: 450 DSIQLDIATTKIMDFIKFESG 512
D++ + + + F G
Sbjct: 154 DTLVISLPDQSVAGHHPFSKG 174
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 60.5 bits (140), Expect = 4e-08
Identities = 25/85 (29%), Positives = 44/85 (51%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
+ VDG R D +P G MD++++
Sbjct: 64 GNVLVDGVARKDLRFPVGLMDIITI 88
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 60.1 bits (139), Expect = 6e-08
Identities = 28/85 (32%), Positives = 44/85 (51%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSM 255
+ VDG R D +P G DV+++
Sbjct: 63 GKVLVDGISRKDLRFPVGLFDVITL 87
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 57.2 bits (132), Expect = 4e-07
Identities = 26/91 (28%), Positives = 50/91 (54%)
Frame = +1
Query: 7 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 186
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 187 IKVDGKVRTDPTYPAGFMDVVSMRRLMNCFV 279
+KVDG++ D +P GFMDV+S+ L N ++
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYI 97
Score = 35.5 bits (78), Expect = 1.5
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 279 LIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 455
++YD KG+ I + P KL K VK+ G + L HDG+TI I +D
Sbjct: 98 IVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKTIVTDRKDINTSDV 156
Query: 456 IQLDIATTKIMDFIKFESG 512
+ + I +I + +K G
Sbjct: 157 LLMKIPDLEIENVLKIAEG 175
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 57.2 bits (132), Expect = 4e-07
Identities = 28/86 (32%), Positives = 47/86 (54%)
Frame = +1
Query: 7 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 186
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 187 IKVDGKVRTDPTYPAGFMDVVSMRRL 264
+ ++G + TD D++S ++
Sbjct: 64 VLLNGHIVTDEHIGIDVFDIISFPKI 89
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 54.4 bits (125), Expect = 3e-06
Identities = 30/88 (34%), Positives = 48/88 (54%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+ Q
Sbjct: 4 YLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILHQ 62
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVSMRRL 264
R + V+G+ D G D+VS+ +L
Sbjct: 63 RDVLVNGRACKDSRMGLGVFDIVSIPKL 90
Score = 38.7 bits (86), Expect = 0.16
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 509 GNLCMITGGRNLGRVGTIVSRERHPGSF--DIVHIKDSTGHTFATRLNNVFIIGKA 670
GN+ MI GG++ G+VG IV R S ++ DS G F T VF++G++
Sbjct: 177 GNVAMIVGGKHSGKVGRIVEIIRTASSVPNHVILTDDSAGERFETIEEYVFMVGRS 232
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 54.4 bits (125), Expect = 3e-06
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 177
HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV ++
Sbjct: 8 HLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLN 67
Query: 178 QRLIKVDGKVRTDPTYPAGFMDVVSM 255
+ VDG+ D +P G DV+++
Sbjct: 68 NGKVLVDGRPIKDYKFPVGLFDVLAI 93
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 54.0 bits (124), Expect = 4e-06
Identities = 30/86 (34%), Positives = 42/86 (48%)
Frame = +3
Query: 255 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP 434
E E +R++Y+ +G + + T E A KL KV+ P N L THDGRT D
Sbjct: 87 EINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDK 146
Query: 435 LIKVNDSIQLDIATTKIMDFIKFESG 512
KV D + + KI + IK + G
Sbjct: 147 SKKVGDVWAVSVPDMKISEIIKMQPG 172
Score = 47.2 bits (107), Expect = 4e-04
Identities = 24/83 (28%), Positives = 42/83 (50%)
Frame = +1
Query: 7 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 186
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 187 IKVDGKVRTDPTYPAGFMDVVSM 255
+KVDGK + + GFMDV+ +
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEI 88
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 50.0 bits (114), Expect = 6e-05
Identities = 24/84 (28%), Positives = 43/84 (51%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVS 252
+ ++GK +D P G D+++
Sbjct: 63 DNVLINGKAISDEERPVGMFDILA 86
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 48.4 bits (110), Expect = 2e-04
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +3
Query: 264 NELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIK 443
N+ +R++ G+ T++ I E K+CKV ++ ++T D R ++ IK
Sbjct: 96 NKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIK 155
Query: 444 VNDSIQLDIATTKIMDFIKFESGT-CV*SR 530
V DS+ + +I+ +KFE G+ C+ +R
Sbjct: 156 VEDSLLIKTINDEIVYALKFEVGSLCLITR 185
Score = 40.3 bits (90), Expect = 0.051
Identities = 22/84 (26%), Positives = 39/84 (46%)
Frame = +1
Query: 1 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 180
H KR+++ K G++ + S+GPH + + L+ ++ A E K+VK
Sbjct: 8 HQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKT 67
Query: 181 RLIKVDGKVRTDPTYPAGFMDVVS 252
+ V+GK +P MD +S
Sbjct: 68 GFLYVNGKKCLSHKFPISLMDTIS 91
Score = 38.7 bits (86), Expect = 0.16
Identities = 16/62 (25%), Positives = 35/62 (56%)
Frame = +2
Query: 506 VGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKARRRNI 685
VG+LC+IT G++LG + I + ++H++ G + +++ +IG+++ +
Sbjct: 177 VGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKKCSDLLVIGESKTSIL 236
Query: 686 SL 691
SL
Sbjct: 237 SL 238
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 46.4 bits (105), Expect = 8e-04
Identities = 26/83 (31%), Positives = 42/83 (50%)
Frame = +1
Query: 7 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 186
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 187 IKVDGKVRTDPTYPAGFMDVVSM 255
+ VDGKV + GFMD +++
Sbjct: 66 VMVDGKVVKERRRGIGFMDTLTV 88
Score = 33.5 bits (73), Expect = 5.9
Identities = 25/79 (31%), Positives = 34/79 (43%)
Frame = +3
Query: 285 YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQL 464
YD KG+ I E KL +VK + HDG T+ IK DS+ +
Sbjct: 97 YDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLV 156
Query: 465 DIATTKIMDFIKFESGTCV 521
I +I+D +KF G V
Sbjct: 157 KIPKKEIVDVLKFAPGNRV 175
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 45.2 bits (102), Expect = 0.002
Identities = 26/84 (30%), Positives = 37/84 (44%)
Frame = +1
Query: 4 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183
LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 10 LKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIYSG 69
Query: 184 LIKVDGKVRTDPTYPAGFMDVVSM 255
++VDG RT + G MDVV +
Sbjct: 70 NVEVDGVKRTSLHHGIGLMDVVEL 93
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 41.9 bits (94), Expect = 0.017
Identities = 26/68 (38%), Positives = 33/68 (48%)
Frame = -3
Query: 700 AARQRDVTPSCLADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHAPQVTASRDH 521
A +RD D EHV + R + ++ GVL VHN EG + LA D A V + DH
Sbjct: 40 ALGKRDHRLVARTDGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATGVVTTGDH 99
Query: 520 TQVPDSNL 497
Q D L
Sbjct: 100 AQSADVEL 107
Score = 37.9 bits (84), Expect = 0.27
Identities = 25/86 (29%), Positives = 45/86 (52%)
Frame = -2
Query: 515 SSRLKLDEVHNLRSCNV*LDGIVDFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVL 336
S+ ++LD + +L +V +G+ D + + +GAA+++ R+ L QLVL
Sbjct: 102 SADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVL 161
Query: 335 SLLRGDTVDCESALNIID*TKQFISL 258
D V ES+L ++D + FI+L
Sbjct: 162 RFDSLDAVHNESSLGVVDEPEVFIAL 187
>UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Putative
uncharacterized protein - marine gamma proteobacterium
HTCC2143
Length = 110
Score = 34.7 bits (76), Expect = 2.5
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 523 DHGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGTK 675
DH R A HR R RL + H+G+ L+H++EQ +G K
Sbjct: 60 DHQRLFKAALARHRKSRRDQRLHKSLRHKGIAQAELQHKIEQDYQETKGQK 110
>UniRef50_Q3W3I5 Cluster: Putative uncharacterized protein; n=1;
Frankia sp. EAN1pec|Rep: Putative uncharacterized
protein - Frankia sp. EAN1pec
Length = 188
Score = 34.3 bits (75), Expect = 3.4
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = +3
Query: 453 SIQLDIATTKIMDFIKF-----ESGTCV*SREAVTWGAW-APSCPARDIPAPSTLCTSRT 614
S +LD T + DF + +S + S W AW A CP R +P+P+T T+ T
Sbjct: 113 SPELDALATHVADFARMLTKLEDSASTPGSTAWTAWTAWTATPCP-RSLPSPATCATTTT 171
Query: 615 PRDTPS 632
P S
Sbjct: 172 PSSLDS 177
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 33.9 bits (74), Expect = 4.4
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -1
Query: 249 DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALAQLV 85
+NI + I + N P E LFH F DFVSG ++ I + + + +AQ +
Sbjct: 58 ENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIAQFI 112
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 813,296,201
Number of Sequences: 1657284
Number of extensions: 17813139
Number of successful extensions: 55421
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 52324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55370
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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